RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 PTP4A3O75365 173 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 GJB3O75712 270 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 TRPA1O75762 1119 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 DGAT1O75907 488 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 SLU7O95391 586 aaKnown RBP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 PGM3O95394 542 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 ZBTB48P10074 688 aaPredicted RBP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 CDK4P11802 303 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 ANXA13P27216 316 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 PDIA3P30101 505 aaKnown RBP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 SCNN1GP51170 649 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 CLCN4P51793 760 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 NEK4P51957 841 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 DSTNP60981 165 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 HNRNPUQ00839 825 aaKnown RBP eCLIP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 BFSP1Q12934 665 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 GNA13Q14344 377 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 ZNF460Q14592 562 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 LASP1Q14847 261 aaKnown RBP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 LETM2Q2VYF4 491 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 CCDC40Q4G0X9 1142 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 FBXO43Q4G163 708 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 FAM47CQ5HY64 1035 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 FAM209AQ5JX71 171 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 FYB2Q5VWT5 728 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 FBXW10Q5XX13 1052 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 ZNF787Q6DD87 383 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 C8orf74Q6P047 294 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 DCLRE1AQ6PJP8 1040 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 CEP128Q6ZU80 1094 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 NCCRP1Q6ZVX7 275 aaPredicted RBP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 NLRC3Q7RTR2 1065 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 OVCH2Q7RTZ1 564 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 VSIG10LQ86VR7 867 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 CACNA2D3Q8IZS8 1091 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 CYP4X1Q8N118 509 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 REXO1Q8N1G1 1221 aaKnown RBP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 NIPA2Q8N8Q9 360 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 ANKS4BQ8N8V4 417 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 BTN2A2Q8WVV5 523 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 DNAAF4Q8WXU2 420 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 USP7Q93009 1102 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 PLD4Q96BZ4 506 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 MAML3Q96JK9 1138 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 CRBNQ96SW2 442 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 MPHOSPH9Q99550 1183 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 TXN2Q99757 166 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 MTMR12Q9C0I1 747 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 MAGEH1Q9H213 219 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 PSTPIP2Q9H939 334 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 UPF2Q9HAU5 1272 aaKnown RBP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 DDX4Q9NQI0 724 aaKnown RBP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 SDHAF3Q9NRP4 125 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 ANO10Q9NW15 660 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 OGFRQ9NZT2 677 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 KIAA1257Q9ULG3 409 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 LRFN2Q9ULH4 789 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 L1RE1Q9UN81 338 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 APOBEC2Q9Y235 224 aaKnown RBP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 ASB3Q9Y575 518 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 PCDHGA9Q9Y5G4 932 aaKnown RBP4.54□□□□□ -1.68
BRCA1-220ENST00000492859 PCDHGA8Q9Y5G5 932 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 PCDHGA7Q9Y5G6 932 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 PCDHGA6Q9Y5G7 932 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 PCDHGA3Q9Y5H0 932 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 PCDHGA2Q9Y5H1 932 aa4.54□□□□□ -1.68
BRCA1-220ENST00000492859 GOLGA6L7A0A1B0GV03 622 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 hCG_1807616A0A1W2PRN6 198 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 UPK3BL1B0FP48 263 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 UPK3BL2E5RIL1 263 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 UBE2CO00762 179 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 NDUFAB1O14561 156 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 HDAC3O15379 428 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 NVLO15381 856 aaKnown RBP4.53□□□□□ -1.68
BRCA1-220ENST00000492859 NOL3O60936 208 aaKnown RBP4.53□□□□□ -1.68
BRCA1-220ENST00000492859 CPNE3O75131 537 aaKnown RBP4.53□□□□□ -1.68
BRCA1-220ENST00000492859 ATP6V1G1O75348 118 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 ERAL1O75616 437 aaKnown RBP4.53□□□□□ -1.68
BRCA1-220ENST00000492859 IFNB1P01574 187 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 PDGFAP04085 211 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 DLDP09622 509 aaKnown RBP4.53□□□□□ -1.68
BRCA1-220ENST00000492859 SRGAP2CP0DJJ0 459 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 C6P13671 934 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 PECAM1P16284 738 aaPredicted RBP4.53□□□□□ -1.68
BRCA1-220ENST00000492859 PTPN2P17706 415 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 MAPK4P31152 587 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 EVI2BP34910 448 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 ARHGDIBP52566 201 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 VCPP55072 806 aaKnown RBP4.53□□□□□ -1.68
BRCA1-220ENST00000492859 STARD6P59095 220 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 MYL6P60660 151 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 ACTR1AP61163 376 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 HAND2P61296 217 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 SH3BP2P78314 561 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 SPAG1Q07617 926 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 SNX1Q13596 522 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 DHX34Q14147 1143 aaKnown RBP4.53□□□□□ -1.68
BRCA1-220ENST00000492859 ADIPOQQ15848 244 aa4.53□□□□□ -1.68
BRCA1-220ENST00000492859 ERCC6LQ2NKX8 1250 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms