RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 PARD3BQ8TEW8 1205 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 VTI1AQ96AJ9 217 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 TUBB6Q9BUF5 446 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 SHCBP1LQ9BZQ2 653 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 HEY2Q9UBP5 337 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 NXF1Q9UBU9 619 aaKnown RBP13.62□□□□□ -0.23
SHOX2-205ENST00000490689 FAM208AQ9UK61 1670 aaKnown RBP13.62□□□□□ -0.23
SHOX2-205ENST00000490689 CLRN2A0PK11 232 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 F5H423 210 aaPredicted RBP13.62□□□□□ -0.23
SHOX2-205ENST00000490689 KIAA0391O15091 583 aaKnown RBP13.62□□□□□ -0.23
SHOX2-205ENST00000490689 CCDC22O60826 627 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 NOL4O94818 638 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 ZWINTO95229 277 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 ALDH18A1P54886 795 aaKnown RBP13.62□□□□□ -0.23
SHOX2-205ENST00000490689 ARL4CP56559 192 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 GRAPQ13588 217 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 CUL3Q13618 768 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 RABGAP1LQ5R372 815 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 IRF2BP2Q7Z5L9 587 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 GRAPLQ8TC17 118 aaPredicted RBP13.62□□□□□ -0.23
SHOX2-205ENST00000490689 CSRNP1Q96S65 589 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 C1orf167Q5SNV9 1468 aa13.62□□□□□ -0.23
SHOX2-205ENST00000490689 H3BRJ5 948 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 ENTPD5O75356 428 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 PAPOLAP51003 745 aaKnown RBP13.61□□□□□ -0.23
SHOX2-205ENST00000490689 ITPK1Q13572 414 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 C16orf86Q6ZW13 317 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 RASSF3Q86WH2 238 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 RHOT1Q8IXI2 618 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 CYP2W1Q8TAV3 490 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 ALG3Q92685 438 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 TRIM11Q96F44 468 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 OSBPL8Q9BZF1 889 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 ZBTB39O15060 712 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 ZBED4O75132 1171 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 GH1P01241 217 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 ANXA13P27216 316 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 RFC5P40937 340 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 PRELPP51888 382 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 ECM1Q16610 540 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 ARHGAP27Q6ZUM4 889 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 HAUS6Q7Z4H7 955 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 TSSK1BQ9BXA7 367 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 AGPAT3Q9NRZ7 376 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 TTC4O95801 387 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 GSCP56915 257 aaPredicted RBP13.61□□□□□ -0.23
SHOX2-205ENST00000490689 NCALDP61601 193 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 RINT1Q6NUQ1 792 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 BTNL9Q6UXG8 535 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 EXOC3L1Q86VI1 746 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 HSPH1Q92598 858 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 DNAJC19Q96DA6 116 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 MYLK2Q9H1R3 596 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 GANQ9H2C0 597 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 KRT10P13645 584 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 STAT2P52630 851 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 SF3B3Q15393 1217 aaKnown RBP13.61□□□□□ -0.23
SHOX2-205ENST00000490689 KRT39Q6A163 491 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 KCTD6Q8NC69 237 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 SLCO1B3Q9NPD5 702 aa13.61□□□□□ -0.23
SHOX2-205ENST00000490689 IQANK1A0A1B0GTG1 560 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 ESYT2A0FGR8 921 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 MCF2LO15068 1137 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 CREB1P16220 341 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 OSTNP61366 133 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 HIF1AQ16665 826 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 SH2D4BQ5SQS7 431 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 CRLF3Q8IUI8 442 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 SLC12A6Q9UHW9 1150 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 GINS2Q9Y248 185 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 DENND3A2RUS2 1198 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 IPO5O00410 1097 aaKnown RBP13.6□□□□□ -0.23
SHOX2-205ENST00000490689 SNUPNO95149 360 aaKnown RBP13.6□□□□□ -0.23
SHOX2-205ENST00000490689 YY1P25490 414 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 EPHA7Q15375 998 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 CDO1Q16878 200 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 TEX9Q8N6V9 391 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 AGR3Q8TD06 166 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 CDCA7Q9BWT1 371 aaPredicted RBP13.6□□□□□ -0.23
SHOX2-205ENST00000490689 HSPBP1Q9NZL4 362 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 SEPT9Q9UHD8 586 aaPredicted RBP13.6□□□□□ -0.23
SHOX2-205ENST00000490689 TTLL3Q9Y4R7 772 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 VHLP40337 213 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 ARL1P40616 181 aaPredicted RBP13.6□□□□□ -0.23
SHOX2-205ENST00000490689 PPP1R18Q6NYC8 613 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 ISLR2Q6UXK2 745 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 FAM196AQ6ZSG2 479 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 CYFIP1Q7L576 1253 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 PRUNE1Q86TP1 453 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 SLC47A2Q86VL8 602 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 PRELID2Q8N945 189 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 RBM46Q8TBY0 533 aaKnown RBP13.6□□□□□ -0.23
SHOX2-205ENST00000490689 PIK3R5Q8WYR1 880 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 MAGEB18Q96M61 343 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 TTC25Q96NG3 672 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 ANLNQ9NQW6 1124 aa13.6□□□□□ -0.23
SHOX2-205ENST00000490689 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.59□□□□□ -0.23
SHOX2-205ENST00000490689 CNGA1P29973 690 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 C3orf62Q6ZUJ4 267 aa13.59□□□□□ -0.23
SHOX2-205ENST00000490689 FBXL13Q8NEE6 735 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms