RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 FNIP2Q9P278 1114 aa23.84■■□□□ 1.41
COL9A3-211ENST00000477612 STK17AQ9UEE5 414 aa23.84■■□□□ 1.41
COL9A3-211ENST00000477612 CCDC39Q9UFE4 941 aa23.84■■□□□ 1.41
COL9A3-211ENST00000477612 CASTOR2A6NHX0 329 aa23.83■■□□□ 1.41
COL9A3-211ENST00000477612 TMEM189-UBE2V1I3L0A0 370 aa23.83■■□□□ 1.41
COL9A3-211ENST00000477612 TEX28O15482 410 aa23.83■■□□□ 1.41
COL9A3-211ENST00000477612 CEBPZQ03701 1054 aaKnown RBP23.83■■□□□ 1.41
COL9A3-211ENST00000477612 DHX8Q14562 1220 aaKnown RBP23.83■■□□□ 1.41
COL9A3-211ENST00000477612 CES5AQ6NT32 575 aa23.83■■□□□ 1.41
COL9A3-211ENST00000477612 RASSF8Q8NHQ8 419 aa23.83■■□□□ 1.41
COL9A3-211ENST00000477612 NECTIN4Q96NY8 510 aa23.83■■□□□ 1.41
COL9A3-211ENST00000477612 FIZ1Q96SL8 496 aa23.83■■□□□ 1.41
COL9A3-211ENST00000477612 TCHPQ9BT92 498 aa23.83■■□□□ 1.41
COL9A3-211ENST00000477612 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.83■■□□□ 1.41
COL9A3-211ENST00000477612 CACNG4Q9UBN1 327 aa23.83■■□□□ 1.41
COL9A3-211ENST00000477612 SF3B1O75533 1304 aaKnown RBP eCLIP23.83■■□□□ 1.4
COL9A3-211ENST00000477612 SMIM28A0A1B0GU29 152 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 C2CD2LO14523 706 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 DCXO43602 365 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 FAM13AO94988 1023 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 KIF4AO95239 1232 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 ADH1AP07327 375 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 YARSP54577 528 aaKnown RBP23.82■■□□□ 1.4
COL9A3-211ENST00000477612 MCL1Q07820 350 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 RNF135Q8IUD6 432 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 LINC00301Q8NCQ3 95 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 RABGGTAQ92696 567 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 FBXL18Q96ME1 805 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 UROC1Q96N76 676 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 ACAP3Q96P50 834 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 C11orf16Q9NQ32 467 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 MYO10Q9HD67 2058 aa23.82■■□□□ 1.4
COL9A3-211ENST00000477612 TRAK2O60296 914 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 PAPLNO95428 1278 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 PIGRP01833 764 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 KCNE1P15382 129 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 ABCD1P33897 745 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 MTHFRP42898 656 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 ELAVL2Q12926 359 aaKnown RBP23.81■■□□□ 1.4
COL9A3-211ENST00000477612 NOLC1Q14978 699 aaKnown RBP eCLIP23.81■■□□□ 1.4
COL9A3-211ENST00000477612 HERC4Q5GLZ8 1057 aaPredicted RBP23.81■■□□□ 1.4
COL9A3-211ENST00000477612 KIAA1841Q6NSI8 718 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 DCLRE1AQ6PJP8 1040 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 ZBTB33Q86T24 672 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 MYCT1Q8N699 235 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 KRI1Q8N9T8 703 aaKnown RBP23.81■■□□□ 1.4
COL9A3-211ENST00000477612 HDAC7Q8WUI4 952 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 SNX27Q96L92 541 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 APOL5Q9BWW9 433 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 ST6GALNAC4Q9H4F1 302 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 CNTN3Q9P232 1028 aa23.81■■□□□ 1.4
COL9A3-211ENST00000477612 TRIOO75962 3097 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 CLDN3O15551 220 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 PPP6R2O75170 966 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 TXLNAP40222 546 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 GTF2BQ00403 316 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 UPP1Q16831 310 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 GLRA4Q5JXX5 417 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 RRAGBQ5VZM2 374 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 CD300LGQ6UXG3 332 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 RIPOR3Q96MK2 946 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 ZMAT2Q96NC0 199 aaKnown RBP23.8■■□□□ 1.4
COL9A3-211ENST00000477612 RHOBTB2Q9BYZ6 727 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 HAPLN2Q9GZV7 340 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 SFXN1Q9H9B4 322 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 DPP7Q9UHL4 492 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 TBX20Q9UMR3 447 aa23.8■■□□□ 1.4
COL9A3-211ENST00000477612 MEFVO15553 781 aaPredicted RBP23.79■■□□□ 1.4
COL9A3-211ENST00000477612 KRT18P05783 430 aaKnown RBP23.79■■□□□ 1.4
COL9A3-211ENST00000477612 CLCNKBP51801 687 aa23.79■■□□□ 1.4
COL9A3-211ENST00000477612 OSTNP61366 133 aa23.79■■□□□ 1.4
COL9A3-211ENST00000477612 CREMQ03060 361 aa23.79■■□□□ 1.4
COL9A3-211ENST00000477612 RTP2Q5QGT7 225 aa23.79■■□□□ 1.4
COL9A3-211ENST00000477612 RARS2Q5T160 578 aaKnown RBP23.79■■□□□ 1.4
COL9A3-211ENST00000477612 LILRA6Q6PI73 481 aa23.79■■□□□ 1.4
COL9A3-211ENST00000477612 GPR149Q86SP6 731 aa23.79■■□□□ 1.4
COL9A3-211ENST00000477612 C12orf76Q8N812 135 aaPredicted RBP23.79■■□□□ 1.4
COL9A3-211ENST00000477612 CMASQ8NFW8 434 aaPredicted RBP23.79■■□□□ 1.4
COL9A3-211ENST00000477612 PIK3R5Q8WYR1 880 aa23.79■■□□□ 1.4
COL9A3-211ENST00000477612 B3GALT6Q96L58 329 aa23.79■■□□□ 1.4
COL9A3-211ENST00000477612 ZNF396Q96N95 335 aaPredicted RBP23.79■■□□□ 1.4
COL9A3-211ENST00000477612 POMKQ9H5K3 350 aa23.79■■□□□ 1.4
COL9A3-211ENST00000477612 SLC38A7Q9NVC3 462 aa23.79■■□□□ 1.4
COL9A3-211ENST00000477612 SLC10A6Q3KNW5 377 aa23.78■■□□□ 1.4
COL9A3-211ENST00000477612 TMEM31Q5JXX7 168 aa23.78■■□□□ 1.4
COL9A3-211ENST00000477612 ATAT1Q5SQI0 421 aa23.78■■□□□ 1.4
COL9A3-211ENST00000477612 C15orf39Q6ZRI6 1047 aa23.78■■□□□ 1.4
COL9A3-211ENST00000477612 CCDC73Q6ZRK6 1079 aa23.78■■□□□ 1.4
COL9A3-211ENST00000477612 LNX1Q8TBB1 728 aaPredicted RBP23.78■■□□□ 1.4
COL9A3-211ENST00000477612 RIN2Q8WYP3 895 aaPredicted RBP23.78■■□□□ 1.4
COL9A3-211ENST00000477612 DDX27Q96GQ7 796 aaKnown RBP23.78■■□□□ 1.4
COL9A3-211ENST00000477612 RPGRIP1Q96KN7 1286 aa23.78■■□□□ 1.4
COL9A3-211ENST00000477612 LRFN3Q9BTN0 628 aa23.78■■□□□ 1.4
COL9A3-211ENST00000477612 TTPALQ9BTX7 342 aa23.78■■□□□ 1.4
COL9A3-211ENST00000477612 CDH22Q9UJ99 828 aa23.78■■□□□ 1.4
COL9A3-211ENST00000477612 ANK1P16157 1881 aa23.77■■□□□ 1.4
COL9A3-211ENST00000477612 K7ENM7 598 aa23.77■■□□□ 1.4
COL9A3-211ENST00000477612 TBCAO75347 108 aaKnown RBP23.77■■□□□ 1.4
COL9A3-211ENST00000477612 YEATS4O95619 227 aa23.77■■□□□ 1.4
COL9A3-211ENST00000477612 GLUD1P00367 558 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms