RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 TRIML1Q8N9V2 468 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 SPATA20Q8TB22 786 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 ZNF507Q8TCN5 953 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 TSC1Q92574 1164 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 MRPL9Q9BYD2 267 aaKnown RBP9.53□□□□□ -0.88
COL28A1-205ENST00000453441 PDZD7Q9H5P4 517 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 POLD4Q9HCU8 107 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 PTPRHQ9HD43 1115 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 CXXC1Q9P0U4 656 aaPredicted RBP9.53□□□□□ -0.88
COL28A1-205ENST00000453441 MSRAQ9UJ68 235 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 RWDD3Q9Y3V2 267 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 PCDHB2Q9Y5E7 798 aa9.53□□□□□ -0.88
COL28A1-205ENST00000453441 INPPL1O15357 1258 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 DGKIO75912 1065 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 ITGA4P13612 1032 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 CTHP32929 405 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 MCM4P33991 863 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 DEFB103AP81534 67 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 MCL1Q07820 350 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 NOLC1Q14978 699 aaKnown RBP eCLIP9.52□□□□□ -0.89
COL28A1-205ENST00000453441 ZNF568Q3ZCX4 644 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 COBLL1Q53SF7 1204 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 UBXN11Q5T124 520 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 GLB1LQ6UWU2 654 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 HS2ST1Q7LGA3 356 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 GRAMD1CQ8IYS0 662 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 SYCP3Q8IZU3 236 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 CYP4X1Q8N118 509 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 CPB2Q96IY4 423 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 PCMTD1Q96MG8 357 aaPredicted RBP9.52□□□□□ -0.89
COL28A1-205ENST00000453441 SAMD11Q96NU1 681 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 TSPAN18Q96SJ8 248 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 YME1L1Q96TA2 773 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 TCHPQ9BT92 498 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 CCDC94Q9BW85 323 aaPredicted RBP9.52□□□□□ -0.89
COL28A1-205ENST00000453441 TARS2Q9BW92 718 aaKnown RBP9.52□□□□□ -0.89
COL28A1-205ENST00000453441 TMEM117Q9H0C3 514 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 NUP62CLQ9H1M0 184 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 CLSTN2Q9H4D0 955 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 TOPORSQ9NS56 1045 aaPredicted RBP9.52□□□□□ -0.89
COL28A1-205ENST00000453441 TOR4AQ9NXH8 423 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 KANSL3Q9P2N6 904 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 GIT1Q9Y2X7 761 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 STYXL1Q9Y6J8 313 aa9.52□□□□□ -0.89
COL28A1-205ENST00000453441 RANBP2P49792 3224 aaKnown RBP9.51□□□□□ -0.89
COL28A1-205ENST00000453441 PTPRSQ13332 1948 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 NPTXRO95502 500 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 LDHAP00338 332 aaKnown RBP9.51□□□□□ -0.89
COL28A1-205ENST00000453441 MYBP10242 640 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 GARTP22102 1010 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 GRM5P41594 1212 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 YARSP54577 528 aaKnown RBP9.51□□□□□ -0.89
COL28A1-205ENST00000453441 SKOR1P84550 965 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 PNOCQ13519 176 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 STIM1Q13586 685 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 MYBPC2Q14324 1141 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 PKDCCQ504Y2 493 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 ZC2HC1CQ53FD0 456 aaPredicted RBP9.51□□□□□ -0.89
COL28A1-205ENST00000453441 ZNF658Q5TYW1 1059 aaPredicted RBP9.51□□□□□ -0.89
COL28A1-205ENST00000453441 C12orf56Q8IXR9 622 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 LRRC43Q8N309 656 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 GUF1Q8N442 669 aaKnown RBP9.51□□□□□ -0.89
COL28A1-205ENST00000453441 URGCPQ8TCY9 931 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 TMEM174Q8WUU8 243 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 SYAP1Q96A49 352 aaPredicted RBP9.51□□□□□ -0.89
COL28A1-205ENST00000453441 ZNF689Q96CS4 500 aaPredicted RBP9.51□□□□□ -0.89
COL28A1-205ENST00000453441 GBP3Q9H0R5 595 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 CDT1Q9H211 546 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 RSAD1Q9HA92 442 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 RC3H2Q9HBD1 1191 aaKnown RBP9.51□□□□□ -0.89
COL28A1-205ENST00000453441 KIAA1586Q9HCI6 787 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 TBC1D7Q9P0N9 293 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 IPPQ9Y573 584 aa9.51□□□□□ -0.89
COL28A1-205ENST00000453441 A0A0B4J269 797 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 ABLIM1O14639 778 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 OGTO15294 1046 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 UPP2O95045 317 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 CLTAP09496 248 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 ATF7P17544 494 aaPredicted RBP9.5□□□□□ -0.89
COL28A1-205ENST00000453441 CASP1P29466 404 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 MATR3P43243 847 aaKnown RBP eCLIP9.5□□□□□ -0.89
COL28A1-205ENST00000453441 CASP5P51878 434 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 STK4Q13043 487 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 KNOP1Q1ED39 458 aaKnown RBP9.5□□□□□ -0.89
COL28A1-205ENST00000453441 FOXR2Q6PJQ5 311 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 CD302Q8IX05 232 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 RNF169Q8NCN4 708 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 SMG8Q8ND04 991 aaKnown RBP9.5□□□□□ -0.89
COL28A1-205ENST00000453441 SNIP1Q8TAD8 396 aaKnown RBP9.5□□□□□ -0.89
COL28A1-205ENST00000453441 SCFD1Q8WVM8 642 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 RPS6KC1Q96S38 1066 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 MSTO1Q9BUK6 570 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 EIF2AQ9BY44 585 aaKnown RBP9.5□□□□□ -0.89
COL28A1-205ENST00000453441 PLEKHA5Q9HAU0 1116 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 SLC39A2Q9NP94 309 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 AAASQ9NRG9 546 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 TYW1Q9NV66 732 aaKnown RBP9.5□□□□□ -0.89
COL28A1-205ENST00000453441 ANKFY1Q9P2R3 1169 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 PCDHA5Q9Y5H7 936 aa9.5□□□□□ -0.89
COL28A1-205ENST00000453441 CITO14578 2027 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms