RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GDF3Q9NR23 364 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 SUCLA2Q9P2R7 463 aaPredicted RBP15.99■□□□□ 0.15
USP4-203ENST00000415188 APEX2Q9UBZ4 518 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 DNAJC12Q9UKB3 198 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 AJAP1Q9UKB5 411 aaPredicted RBP15.99■□□□□ 0.15
USP4-203ENST00000415188 FAN1Q9Y2M0 1017 aa15.99■□□□□ 0.15
USP4-203ENST00000415188 WDR64B1ANS9 1081 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 DDX3XO00571 662 aaKnown RBP eCLIP15.98■□□□□ 0.152e-8■■■■□ 21
USP4-203ENST00000415188 TMEM253P0C7T8 217 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 CSF2RAP15509 400 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 CYP2C18P33260 490 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 PSMC5P62195 406 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 MRPS9P82933 396 aaKnown RBP15.98■□□□□ 0.15
USP4-203ENST00000415188 SMAD3P84022 425 aaKnown RBP15.98■□□□□ 0.15
USP4-203ENST00000415188 PAK2Q13177 524 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 DRAP1Q14919 205 aaPredicted RBP15.98■□□□□ 0.15
USP4-203ENST00000415188 PGM5Q15124 567 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 ALS2CLQ60I27 953 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 C16orf59Q7L2K0 433 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 USP38Q8NB14 1042 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 DNERQ8NFT8 737 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 OR6J1Q8NGC5 347 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 ACTRT1Q8TDG2 376 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 TAAR1Q96RJ0 339 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 SENP7Q9BQF6 1050 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.98■□□□□ 0.15
USP4-203ENST00000415188 SYT11Q9BT88 431 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 DMGDHQ9UI17 866 aaKnown RBP15.98■□□□□ 0.15
USP4-203ENST00000415188 TMEM59LQ9UK28 342 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 EXOC7Q9UPT5 735 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 UMODL1Q5DID0 1318 aa15.98■□□□□ 0.15
USP4-203ENST00000415188 DDX39AO00148 427 aaKnown RBP15.97■□□□□ 0.15
USP4-203ENST00000415188 B4GALT4O60513 344 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 DKC1O60832 514 aaKnown RBP eCLIP15.97■□□□□ 0.15
USP4-203ENST00000415188 MYL3P08590 195 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 MYBL2P10244 700 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 ACRP10323 421 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 NOP2P46087 812 aaKnown RBP15.97■□□□□ 0.15
USP4-203ENST00000415188 GTF2BQ00403 316 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 PSMB7Q99436 277 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 POLD4Q9HCU8 107 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 WDR81Q562E7 1941 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 GOLGA6BA6NDN3 693 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 CCDC188H7C350 402 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 MAFGO15525 162 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 RNF40O75150 1001 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 ARIH2O95376 493 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 YWHABP31946 246 aaKnown RBP15.97■□□□□ 0.15
USP4-203ENST00000415188 NCKAP1LP55160 1127 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 ENPEPQ07075 957 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 PPIGQ13427 754 aaKnown RBP eCLIP15.97■□□□□ 0.151e-7■■■■■ 29.8
USP4-203ENST00000415188 CLUL1Q15846 466 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 CBWD6Q4V339 395 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 CBWD3Q5JTY5 395 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 CBWD5Q5RIA9 395 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 TMEM240Q5SV17 173 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 ZNF746Q6NUN9 644 aaPredicted RBP15.97■□□□□ 0.15
USP4-203ENST00000415188 SND1Q7KZF4 910 aaKnown RBP eCLIP15.97■□□□□ 0.15
USP4-203ENST00000415188 XXYLT1Q8NBI6 393 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 SCFD2Q8WU76 684 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 PPP1R13LQ8WUF5 828 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 RFFLQ8WZ73 363 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 GPRASP2Q96D09 838 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 MPHOSPH6Q99547 160 aaKnown RBP15.97■□□□□ 0.15
USP4-203ENST00000415188 PDCD2LQ9BRP1 358 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 TTYH1Q9H313 450 aaPredicted RBP15.97■□□□□ 0.15
USP4-203ENST00000415188 PXMP2Q9NR77 195 aa15.97■□□□□ 0.15
USP4-203ENST00000415188 OPA1O60313 960 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 RPS6KA5O75582 802 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 ZMYND10O75800 440 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 SYF2O95926 243 aaKnown RBP15.96■□□□□ 0.14
USP4-203ENST00000415188 TRIM49P0CI25 452 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 TRIM49CP0CI26 452 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 TXNP10599 105 aaKnown RBP15.96■□□□□ 0.14
USP4-203ENST00000415188 CCND2P30279 289 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 ABCD1P33897 745 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 MATR3P43243 847 aaKnown RBP eCLIP15.96■□□□□ 0.14
USP4-203ENST00000415188 CPT1AP50416 773 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 VAMP7P51809 220 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 PURAQ00577 322 aaKnown RBP15.96■□□□□ 0.14
USP4-203ENST00000415188 TCEAL1Q15170 157 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 GJB7Q6PEY0 223 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 PEX26Q7Z412 305 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 KSR1Q8IVT5 923 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 TMEM199Q8N511 208 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 MREGQ8N565 214 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 OLIG1Q8TAK6 271 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 LNX1Q8TBB1 728 aaPredicted RBP15.96■□□□□ 0.14
USP4-203ENST00000415188 AFAP1L1Q8TED9 768 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 HDAC7Q8WUI4 952 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 MS4A14Q96JA4 679 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 HIPK3Q9H422 1215 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 C17orf75Q9HAS0 396 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 SAMM50Q9Y512 469 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 ARID2Q68CP9 1835 aa15.96■□□□□ 0.14
USP4-203ENST00000415188 GOLGA8KD6RF30 607 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 PGRMC1O00264 195 aaKnown RBP15.95■□□□□ 0.14
USP4-203ENST00000415188 KCNK3O14649 394 aa15.95■□□□□ 0.14
USP4-203ENST00000415188 HEXIM1O94992 359 aaKnown RBP15.95■□□□□ 0.14
USP4-203ENST00000415188 EIF2AK2P19525 551 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms