RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 HACE1Q8IYU2 909 aa15.46■□□□□ 0.07
SF3B1-204ENST00000414963 DBF4BQ8NFT6 615 aa15.46■□□□□ 0.07
SF3B1-204ENST00000414963 CCDC127Q96BQ5 260 aa15.46■□□□□ 0.07
SF3B1-204ENST00000414963 VWCEQ96DN2 955 aa15.46■□□□□ 0.07
SF3B1-204ENST00000414963 ERGIC2Q96RQ1 377 aa15.46■□□□□ 0.07
SF3B1-204ENST00000414963 FNBP1Q96RU3 617 aa15.46■□□□□ 0.07
SF3B1-204ENST00000414963 NXF3Q9H4D5 531 aaKnown RBP15.46■□□□□ 0.07
SF3B1-204ENST00000414963 C1orf112Q9NSG2 853 aa15.46■□□□□ 0.07
SF3B1-204ENST00000414963 SNTG2Q9NY99 539 aa15.46■□□□□ 0.07
SF3B1-204ENST00000414963 LACTBL1A8MY62 500 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 C9IYK1 514 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 N4BP1O75113 896 aaKnown RBP15.45■□□□□ 0.06
SF3B1-204ENST00000414963 EOMESO95936 686 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 TRIM49P0CI25 452 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 TRIM49CP0CI26 452 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 CXCL8P10145 99 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 ITGB8P26012 769 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 FMO5P49326 533 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 YARSP54577 528 aaKnown RBP15.45■□□□□ 0.06
SF3B1-204ENST00000414963 OSTNP61366 133 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 TCERG1LQ5VWI1 586 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 SLC24A5Q71RS6 500 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 NT5DC4Q86YG4 428 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 ZNF516Q92618 1163 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 ANP32BQ92688 251 aaKnown RBP15.45■□□□□ 0.06
SF3B1-204ENST00000414963 SCLYQ96I15 445 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 SNX27Q96L92 541 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 POP1Q99575 1024 aaKnown RBP15.45■□□□□ 0.06
SF3B1-204ENST00000414963 CGRRF1Q99675 332 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 TMEM8AQ9HCN3 771 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 TOPORSQ9NS56 1045 aaPredicted RBP15.45■□□□□ 0.06
SF3B1-204ENST00000414963 DERAQ9Y315 318 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 COQ4Q9Y3A0 265 aa15.45■□□□□ 0.06
SF3B1-204ENST00000414963 ENPP3O14638 875 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 RECQL4O94761 1208 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 C4BPAP04003 597 aaKnown RBP15.44■□□□□ 0.06
SF3B1-204ENST00000414963 DLATP10515 647 aaKnown RBP15.44■□□□□ 0.06
SF3B1-204ENST00000414963 KCNE1P15382 129 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 RAG1P15918 1043 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 ZBTB6Q15916 424 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 DUOXA2Q1HG44 320 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 ZNF598Q86UK7 904 aaKnown RBP15.44■□□□□ 0.06
SF3B1-204ENST00000414963 ECHDC2Q86YB7 292 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 VSTM4Q8IW00 320 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 LINC01599Q8WXQ3 324 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 PGBD4Q96DM1 585 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 HTATIP2Q9BUP3 242 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 TMEM117Q9H0C3 514 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 RNF39Q9H2S5 420 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 UBN1Q9NPG3 1134 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 CNTN3Q9P232 1028 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 GIT1Q9Y2X7 761 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 C2CD2Q9Y426 696 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 HES2Q9Y543 173 aa15.44■□□□□ 0.06
SF3B1-204ENST00000414963 PES1O00541 588 aaKnown RBP15.43■□□□□ 0.06
SF3B1-204ENST00000414963 INPPL1O15357 1258 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 PFKMP08237 780 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 ITGA4P13612 1032 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 ATF7P17544 494 aaPredicted RBP15.43■□□□□ 0.06
SF3B1-204ENST00000414963 TNNI1P19237 187 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 GCLMP48507 274 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 ZACNQ401N2 412 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 CBWD6Q4V339 395 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 CBWD3Q5JTY5 395 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 CBWD5Q5RIA9 395 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 KRT39Q6A163 491 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 CNKSR3Q6P9H4 555 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 SV2AQ7L0J3 742 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 RPUSD2Q8IZ73 545 aaKnown RBP15.43■□□□□ 0.06
SF3B1-204ENST00000414963 TMEM199Q8N511 208 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 PDLIM2Q96JY6 352 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 ELAC1Q9H777 363 aaKnown RBP15.43■□□□□ 0.06
SF3B1-204ENST00000414963 PRDM5Q9NQX1 630 aaPredicted RBP15.43■□□□□ 0.06
SF3B1-204ENST00000414963 SIK3Q9Y2K2 1263 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 TANC1Q9C0D5 1861 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 PTPRJQ12913 1337 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 ITIH6Q6UXX5 1313 aa15.43■□□□□ 0.06
SF3B1-204ENST00000414963 AKAP5P24588 427 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 MXI1P50539 228 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 KCNMA1Q12791 1236 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 CETN1Q12798 172 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 SYCP1Q15431 976 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 TCTN1Q2MV58 587 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 SPECC1LQ69YQ0 1117 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 GBP6Q6ZN66 633 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 AGMOQ6ZNB7 445 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 EFCAB13Q8IY85 973 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 CRIPAKQ8N1N5 446 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 OR5B17Q8NGF7 314 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 CACTINQ8WUQ7 758 aaKnown RBP15.42■□□□□ 0.06
SF3B1-204ENST00000414963 FAM212AQ96EL1 285 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 RNF216Q9NWF9 866 aaPredicted RBP15.42■□□□□ 0.06
SF3B1-204ENST00000414963 PARP2Q9UGN5 583 aa15.42■□□□□ 0.06
SF3B1-204ENST00000414963 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.42■□□□□ 0.06
SF3B1-204ENST00000414963 ABHD14A-ACY1A0A1B0GW23 586 aa15.41■□□□□ 0.06
SF3B1-204ENST00000414963 RBAK-RBAKDNI3L0D1 243 aa15.41■□□□□ 0.06
SF3B1-204ENST00000414963 CSF2RAP15509 400 aa15.41■□□□□ 0.06
SF3B1-204ENST00000414963 MYL7Q01449 175 aa15.41■□□□□ 0.06
SF3B1-204ENST00000414963 IKBKEQ14164 716 aa15.41■□□□□ 0.06
SF3B1-204ENST00000414963 TMEM132DQ14C87 1099 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms