RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 HEATR6Q6AI08 1181 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 EME1Q96AY2 570 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 ASCC2Q9H1I8 757 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 ACADSP16219 412 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 POLD1P28340 1107 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 BTKQ06187 659 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 TRIM72Q6ZMU5 477 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 KCNK16Q96T55 309 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 PNPLA7Q6ZV29 1317 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 A0A0G2JLW4 131 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 ENOSF1Q7L5Y1 443 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 KIAA2013Q8IYS2 634 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 RMDN2Q96LZ7 410 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 RPS6KC1Q96S38 1066 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 ZBTB18Q99592 522 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 ZNF229Q9UJW7 825 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 AURKCQ9UQB9 309 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 TECPR2O15040 1411 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 PDHBP11177 359 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 SDC4P31431 198 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 FOXR1Q6PIV2 292 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 FAM196AQ6ZSG2 479 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 NLRP4Q96MN2 994 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 DBNDD1Q9H9R9 158 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 DDX28Q9NUL7 540 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 TBC1D23Q9NUY8 699 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 SUCLA2Q9P2R7 463 aaPredicted RBP20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 MTO1Q9Y2Z2 717 aaKnown RBP20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 DEPDC5O75140 1603 aa20.63■□□□□ 0.89
CCDC88B-202ENST00000356786 PPP1R12AO14974 1030 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 ASAP2O43150 1006 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 BBOX1O75936 387 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 COMTP21964 271 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 MAGEA4P43358 317 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 AARSP49588 968 aaKnown RBP eCLIP20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 PTPAQ15257 358 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 ZNF699Q32M78 642 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 TRIM65Q6PJ69 517 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 LVRNQ6Q4G3 990 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 DACH2Q96NX9 599 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 MROH2AA6NES4 1674 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 PALM3A6NDB9 673 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 TBXAS1P24557 533 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 CCND2P30279 289 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 FAM47CQ5HY64 1035 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 TMED8Q6PL24 325 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 GPR101Q96P66 508 aaPredicted RBP20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 DNAJC7Q99615 494 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 ZNF408Q9H9D4 720 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 PDP2Q9P2J9 529 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 CSADQ9Y600 493 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 IQSEC2Q5JU85 1478 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 CD44P16070 742 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 MAP4P27816 1152 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 RCN1Q15293 331 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 OR6B3Q8NGW1 331 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 SNRNP27Q8WVK2 155 aaKnown RBP20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 NSL1Q96IY1 281 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 DIP2AQ14689 1571 aa20.62■□□□□ 0.89
CCDC88B-202ENST00000356786 IL10P22301 178 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 PAPOLAP51003 745 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 QRICH1Q2TAL8 776 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 COL23A1Q86Y22 540 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 QTRT2Q9H974 415 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 TMBIM4Q9HC24 238 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 PALMDQ9NP74 551 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 PARVAQ9NVD7 372 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 RAB21Q9UL25 225 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 ENO3P13929 434 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 SSTR3P32745 418 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 CDH6P55285 790 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 TMEM179Q6ZVK1 233 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 FAM160B2Q86V87 743 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 FOXP4Q8IVH2 680 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 EIF2AK1Q9BQI3 630 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 RHBDL2Q9NX52 303 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 DONSONQ9NYP3 566 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 ZFATQ9P243 1243 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 HPS5Q9UPZ3 1129 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 A0A087X0T9 212 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 TMEM253P0C7T8 217 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 FAM228BP0C875 321 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 PRLRP16471 622 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 PAMP19021 973 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 FMO5P49326 533 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 ARL13BQ3SXY8 428 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 SYCP2LQ5T4T6 812 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 ZC3H15Q8WU90 426 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 ATXN7L3BQ96GX2 97 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 SKAP2O75563 359 aaPredicted RBP20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 GH2P01242 217 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 ITGA8P53708 1063 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 EIF3EP60228 445 aaKnown RBP20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 MTMR1Q13613 665 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 EXOC8Q8IYI6 725 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 GALNT4Q8N4A0 578 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 DCAF4Q8WV16 495 aa20.61■□□□□ 0.89
CCDC88B-202ENST00000356786 TMED10P49755 219 aaKnown RBP20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 ITIH4Q14624 930 aa20.6■□□□□ 0.89
CCDC88B-202ENST00000356786 ARMCX2Q7L311 632 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms