RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CLNS1AP54105 237 aaKnown RBP13.52□□□□□ -0.25
LIG1-201ENST00000263274 DLGAP5Q15398 846 aa13.52□□□□□ -0.25
LIG1-201ENST00000263274 OGFOD1Q8N543 542 aa13.52□□□□□ -0.25
LIG1-201ENST00000263274 CCT6BQ92526 530 aa13.52□□□□□ -0.25
LIG1-201ENST00000263274 HAUS1Q96CS2 278 aa13.52□□□□□ -0.25
LIG1-201ENST00000263274 KLHL29Q96CT2 875 aa13.52□□□□□ -0.25
LIG1-201ENST00000263274 RUNDC3BQ96NL0 473 aa13.52□□□□□ -0.25
LIG1-201ENST00000263274 IDI2Q9BXS1 227 aa13.52□□□□□ -0.25
LIG1-201ENST00000263274 NENFQ9UMX5 172 aa13.52□□□□□ -0.25
LIG1-201ENST00000263274 GAS8O95995 478 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 ATF7P17544 494 aaPredicted RBP13.51□□□□□ -0.25
LIG1-201ENST00000263274 CALRP27797 417 aaKnown RBP13.51□□□□□ -0.25
LIG1-201ENST00000263274 ITGA8P53708 1063 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 SARNPP82979 210 aaKnown RBP13.51□□□□□ -0.25
LIG1-201ENST00000263274 EXOC3L1Q86VI1 746 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 FAM213AQ9BRX8 229 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 TMEM39BQ9GZU3 492 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 NKIRAS1Q9NYS0 192 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 PI4K2BG5E9Z4 385 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 SPAG7O75391 227 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 RARGP13631 454 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 MMP13P45452 471 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 RARRES1P49788 294 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 MTMR1Q13613 665 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 TMED2Q15363 201 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 LMO3Q8TAP4 145 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 PGM2Q96G03 612 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 C11orf70Q9BRQ4 267 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 KMT5AQ9NQR1 393 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 PFASO15067 1338 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 GJB6O95452 261 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 GH1P01241 217 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 IFNB1P01574 187 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 NUDT17P0C025 328 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 PLS3P13797 630 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 CHRNB2P17787 502 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 CD58P19256 250 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 CNGA1P29973 690 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 FMO1Q01740 532 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 MYO1EQ12965 1108 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 CLUL1Q15846 466 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 KRT39Q6A163 491 aa13.51□□□□□ -0.25
LIG1-201ENST00000263274 COL23A1Q86Y22 540 aaPredicted RBP13.51□□□□□ -0.25
LIG1-201ENST00000263274 SEC14L1Q92503 715 aa13.5□□□□□ -0.25
LIG1-201ENST00000263274 FNBP1Q96RU3 617 aa13.5□□□□□ -0.25
LIG1-201ENST00000263274 ZNF341Q9BYN7 854 aa13.5□□□□□ -0.25
LIG1-201ENST00000263274 NOD2Q9HC29 1040 aa13.5□□□□□ -0.25
LIG1-201ENST00000263274 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.5□□□□□ -0.25
LIG1-201ENST00000263274 SUN1O94901 812 aa13.5□□□□□ -0.25
LIG1-201ENST00000263274 RRM1P23921 792 aa13.5□□□□□ -0.25
LIG1-201ENST00000263274 SLC15A2Q16348 729 aa13.5□□□□□ -0.25
LIG1-201ENST00000263274 C11orf63Q6NUN7 778 aa13.5□□□□□ -0.25
LIG1-201ENST00000263274 MIEF2Q96C03 454 aa13.5□□□□□ -0.25
LIG1-201ENST00000263274 CEP170P1Q96L14 293 aa13.5□□□□□ -0.25
LIG1-201ENST00000263274 ECT2Q9H8V3 914 aa13.5□□□□□ -0.25
LIG1-201ENST00000263274 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.5□□□□□ -0.25
LIG1-201ENST00000263274 C21orf2O43822 256 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 SKAP2O75563 359 aaPredicted RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 VIL1P09327 827 aaKnown RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 PEX5P50542 639 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 ZNF131P52739 623 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 DMP1Q13316 513 aaPredicted RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 CNGA2Q16280 664 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 FBXL13Q8NEE6 735 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 ATXN2LQ8WWM7 1075 aaKnown RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 ZNF317Q96PQ6 595 aaPredicted RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 RPS6KC1Q96S38 1066 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 PAGR1Q9BTK6 254 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 RAB20Q9NX57 234 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 COL5A3P25940 1745 aaPredicted RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 PPP1R12AO14974 1030 aaPredicted RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 KRT15P19012 456 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 NSFP46459 744 aaKnown RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 KCNJ2P63252 427 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 ELF3P78545 371 aaPredicted RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 PLCB4Q15147 1175 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 UGCGQ16739 394 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 SPOPLQ6IQ16 392 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 OLIG1Q8TAK6 271 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 TGS1Q96RS0 853 aaKnown RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 SYT11Q9BT88 431 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 ADAM7Q9H2U9 754 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 KDM4CQ9H3R0 1056 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 COL20A1Q9P218 1284 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 PCYOX1Q9UHG3 505 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 GGA2Q9UJY4 613 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 TRIM33Q9UPN9 1127 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 ATXN2Q99700 1313 aaKnown RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 CCDC189A1A4V9 331 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 PIK3CDO00329 1044 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 RALAP11233 206 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 PEX19P40855 299 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 R3HDM1Q15032 1099 aaKnown RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 CYFIP1Q7L576 1253 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 C3orf20Q8ND61 904 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 PRCCQ92733 491 aaPredicted RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 ACSF2Q96CM8 615 aaPredicted RBP13.49□□□□□ -0.25
LIG1-201ENST00000263274 TAAR1Q96RJ0 339 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 CCDC77Q9BR77 488 aa13.49□□□□□ -0.25
LIG1-201ENST00000263274 VPS37BQ9H9H4 285 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms