RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	TRM7	P38238	310 aa	Known RBP	3.4	□□□□□ -1.86
UBX5	YDR330W	DED81	P38707	554 aa	Known RBP	3.4	□□□□□ -1.86
UBX5	YDR330W	ARN2	P38724	620 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	YHR122W	P38829	231 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	ALP1	P38971	573 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	JLP2	P40206	208 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	YHC3	P47040	408 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	RAD17	P48581	401 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	SDT1	P53078	280 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	YMD8	Q03697	442 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	RRP17	Q04031	235 aa	Predicted RBP	3.4	□□□□□ -1.86
UBX5	YDR330W	RNH1	Q04740	348 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	MSC3	Q05812	728 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	NDE2	Q07500	545 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	DAP1	Q12091	152 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	YGK3	Q12222	375 aa	Predicted RBP	3.4	□□□□□ -1.86
UBX5	YDR330W	MRX4	Q12467	430 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	FSH3	Q99369	266 aa		3.4	□□□□□ -1.86
UBX5	YDR330W	VPS63	O13549	108 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	MDM35	O60200	86 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	RPL15A	P05748	204 aa	Known RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	STE7	P06784	515 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	TFS1	P14306	219 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	POL30	P15873	258 aa	Known RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	DBP3	P20447	523 aa	Known RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	SCL1	P21243	252 aa	Known RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	ADE1	P27616	306 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	YEF1	P32622	495 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	MNS1	P32906	549 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	NUF2	P33895	451 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	CHK1	P38147	527 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	PEX18	P38855	283 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	AIM2	P39721	246 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	DDI1	P40087	428 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	SIM1	P40472	476 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	RPR2	P40571	144 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	NEJ1	Q06148	342 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	MDM36	Q06820	579 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	RAX1	Q08760	435 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	YPR064W	Q12492	139 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	NAG1	Q8TGN9	163 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	YLL053C	P0CD98	152 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	ZWF1	P11412	505 aa	Known RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	PET9	P18239	318 aa	Known RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	GIT1	P25346	518 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	SRL3	P36167	246 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	MIX23	P38162	196 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	FMP23	P38231	175 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	MTC6	P38849	526 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	MDM31	P38880	579 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	RCY1	P39531	840 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	PRP39	P39682	629 aa	Known RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	RRG9	P40156	214 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	STB1	P42845	420 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	NQM1	P53228	333 aa	Predicted RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	YGR168C	P53293	376 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	NUP49	Q02199	472 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	EGD1	Q02642	157 aa	Known RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	YPL113C	Q02961	396 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	KRE28	Q04431	385 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	RNH202	Q05635	350 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	RRP40	Q08285	240 aa	Known RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	SIA1	Q12212	622 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	YOR114W	Q12219	294 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	RBD2	Q12270	262 aa		3.39	□□□□□ -1.87
UBX5	YDR330W	AIM45	Q12480	344 aa	Known RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	DCP1	Q12517	231 aa	Predicted RBP	3.39	□□□□□ -1.87
UBX5	YDR330W	GAL7	P08431	366 aa		3.38	□□□□□ -1.87
UBX5	YDR330W	CPR1	P14832	162 aa	Known RBP	3.38	□□□□□ -1.87
UBX5	YDR330W	IDP1	P21954	428 aa	Known RBP	3.38	□□□□□ -1.87
UBX5	YDR330W	ATS1	P31386	333 aa		3.38	□□□□□ -1.87
UBX5	YDR330W	OAC1	P32332	324 aa		3.38	□□□□□ -1.87
UBX5	YDR330W	BIG1	P38813	335 aa		3.38	□□□□□ -1.87
UBX5	YDR330W	SNM1	P40993	198 aa		3.38	□□□□□ -1.87
UBX5	YDR330W	OST1	P41543	476 aa	Known RBP	3.38	□□□□□ -1.87
UBX5	YDR330W	HOC1	P47124	396 aa		3.38	□□□□□ -1.87
UBX5	YDR330W	JHD2	P47156	728 aa	Predicted RBP	3.38	□□□□□ -1.87
UBX5	YDR330W	TOS2	P50078	622 aa		3.38	□□□□□ -1.87
UBX5	YDR330W	TPS1	Q00764	495 aa	Known RBP	3.38	□□□□□ -1.87
UBX5	YDR330W	MAK3	Q03503	176 aa		3.38	□□□□□ -1.87
UBX5	YDR330W	GRX3	Q03835	250 aa		3.38	□□□□□ -1.87
UBX5	YDR330W	YLR446W	Q06204	433 aa		3.38	□□□□□ -1.87
UBX5	YDR330W	APC2	Q12440	853 aa		3.38	□□□□□ -1.87
UBX5	YDR330W	CAP2	P13517	287 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	EXG1	P23776	448 aa	Known RBP	3.37	□□□□□ -1.87
UBX5	YDR330W	RPL24B	P24000	155 aa	Known RBP	3.37	□□□□□ -1.87
UBX5	YDR330W	BUD23	P25627	275 aa	Predicted RBP	3.37	□□□□□ -1.87
UBX5	YDR330W	ARO7	P32178	256 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	ASF2	P32448	525 aa	Predicted RBP	3.37	□□□□□ -1.87
UBX5	YDR330W	TOA2	P32774	122 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	PPQ1	P32945	549 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	SFC1	P33303	322 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	GPX2	P38143	162 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	SBE22	P38814	852 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	FCY21	P40039	528 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	YFL067W	P43537	175 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	COQ5	P49017	307 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	MTQ1	P53944	314 aa		3.37	□□□□□ -1.87
UBX5	YDR330W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	3.37	□□□□□ -1.87	not detected
UBX5	YDR330W	SRO7	Q12038	1033 aa		3.37	□□□□□ -1.87

Retrieved 100 of 5,963 RNA–protein pairs in 20.3 ms