RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 GPR65Q8IYL9 337 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 HSD17B14Q9BPX1 270 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 PAAF1Q9BRP4 392 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 SEMA4AQ9H3S1 761 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 ANKEF1Q9NU02 776 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 PCDHA12Q9UN75 941 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 STK36Q9NRP7 1315 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 FSHRP23945 695 aa21.52■■□□□ 1.04
CLN3-262ENST00000637699 CREMQ03060 361 aa21.52■■□□□ 1.04
CLN3-262ENST00000637699 RTP2Q5QGT7 225 aa21.52■■□□□ 1.04
CLN3-262ENST00000637699 DCLRE1AQ6PJP8 1040 aa21.52■■□□□ 1.04
CLN3-262ENST00000637699 GRASPQ7Z6J2 395 aaPredicted RBP21.52■■□□□ 1.04
CLN3-262ENST00000637699 PIGOQ8TEQ8 1089 aa21.52■■□□□ 1.04
CLN3-262ENST00000637699 HASPINQ8TF76 798 aa21.52■■□□□ 1.04
CLN3-262ENST00000637699 RPP25Q9BUL9 199 aaKnown RBP21.52■■□□□ 1.04
CLN3-262ENST00000637699 NFKBIZQ9BYH8 718 aa21.52■■□□□ 1.04
CLN3-262ENST00000637699 POLR3FQ9H1D9 316 aaPredicted RBP21.52■■□□□ 1.04
CLN3-262ENST00000637699 A0A1B0GUA9 196 aa21.51■■□□□ 1.03
CLN3-262ENST00000637699 EPB41L2O43491 1005 aaKnown RBP21.51■■□□□ 1.03
CLN3-262ENST00000637699 LYPLA2O95372 231 aa21.51■■□□□ 1.03
CLN3-262ENST00000637699 RARRES1P49788 294 aa21.51■■□□□ 1.03
CLN3-262ENST00000637699 NTHL1P78549 312 aa21.51■■□□□ 1.03
CLN3-262ENST00000637699 HSP90AA2PQ14568 343 aaPredicted RBP21.51■■□□□ 1.03
CLN3-262ENST00000637699 MAEAQ7L5Y9 396 aa21.51■■□□□ 1.03
CLN3-262ENST00000637699 CEP57Q86XR8 500 aa21.51■■□□□ 1.03
CLN3-262ENST00000637699 FOXQ1Q9C009 403 aa21.51■■□□□ 1.03
CLN3-262ENST00000637699 SLC2A4RGQ9NR83 387 aa21.51■■□□□ 1.03
CLN3-262ENST00000637699 ORC3Q9UBD5 711 aaPredicted RBP21.51■■□□□ 1.03
CLN3-262ENST00000637699 DOCK6Q96HP0 2047 aa21.51■■□□□ 1.03
CLN3-262ENST00000637699 SF3B1O75533 1304 aaKnown RBP eCLIP21.51■■□□□ 1.033e-9■■■■■ 164.7
CLN3-262ENST00000637699 CASTOR2A6NHX0 329 aa21.5■■□□□ 1.03
CLN3-262ENST00000637699 LRRIQ4A6NIV6 560 aa21.5■■□□□ 1.03
CLN3-262ENST00000637699 KRT2P35908 639 aa21.5■■□□□ 1.03
CLN3-262ENST00000637699 CALCRLQ16602 461 aa21.5■■□□□ 1.03
CLN3-262ENST00000637699 KIAA2013Q8IYS2 634 aa21.5■■□□□ 1.03
CLN3-262ENST00000637699 FGF14Q92915 247 aa21.5■■□□□ 1.03
CLN3-262ENST00000637699 TTC12Q9H892 705 aaPredicted RBP21.5■■□□□ 1.03
CLN3-262ENST00000637699 GPRC5CQ9NQ84 441 aa21.5■■□□□ 1.03
CLN3-262ENST00000637699 DLGAP2Q9P1A6 1054 aa21.5■■□□□ 1.03
CLN3-262ENST00000637699 TPCN1Q9ULQ1 816 aa21.5■■□□□ 1.03
CLN3-262ENST00000637699 USO1O60763 962 aaKnown RBP21.49■■□□□ 1.03
CLN3-262ENST00000637699 PFKFB2O60825 505 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 CTDNEP1O95476 244 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 SP9P0CG40 484 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 TXKP42681 527 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 GPC5P78333 572 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 TUSC3Q13454 348 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 FAM171A1Q5VUB5 890 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 PARM1Q6UWI2 310 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 C1orf210Q8IVY1 113 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 HINFPQ9BQA5 517 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 CLSTN3Q9BQT9 956 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 TTPALQ9BTX7 342 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 FBXW11Q9UKB1 542 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 CDH7Q9ULB5 785 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 POLIQ9UNA4 740 aa21.49■■□□□ 1.03
CLN3-262ENST00000637699 ZFP37Q9Y6Q3 630 aaPredicted RBP21.49■■□□□ 1.03
CLN3-262ENST00000637699 CACNA1AO00555 2505 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 LRRN2O75325 713 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 KIF4AO95239 1232 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 GLULP15104 373 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 PSMD5Q16401 504 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 PPM1LQ5SGD2 360 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 LIN9Q5TKA1 542 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 PJA1Q8NG27 643 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 LNX1Q8TBB1 728 aaPredicted RBP21.48■■□□□ 1.03
CLN3-262ENST00000637699 TNFRSF25Q93038 417 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 RMDN1Q96DB5 314 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 BRMS1Q9HCU9 246 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 ZMYM2Q9UBW7 1377 aa21.48■■□□□ 1.03
CLN3-262ENST00000637699 POTEMA6NI47 508 aa21.47■■□□□ 1.03
CLN3-262ENST00000637699 CCL16O15467 120 aa21.47■■□□□ 1.03
CLN3-262ENST00000637699 C8AP07357 584 aa21.47■■□□□ 1.03
CLN3-262ENST00000637699 SNW1Q13573 536 aaKnown RBP21.47■■□□□ 1.03
CLN3-262ENST00000637699 ZC3H14Q6PJT7 736 aaKnown RBP21.47■■□□□ 1.03
CLN3-262ENST00000637699 PIK3R5Q8WYR1 880 aa21.47■■□□□ 1.03
CLN3-262ENST00000637699 WASF1Q92558 559 aa21.47■■□□□ 1.03
CLN3-262ENST00000637699 SHDQ96IW2 340 aa21.47■■□□□ 1.03
CLN3-262ENST00000637699 PRMT7Q9NVM4 692 aaPredicted RBP21.47■■□□□ 1.03
CLN3-262ENST00000637699 SNTG2Q9NY99 539 aa21.47■■□□□ 1.03
CLN3-262ENST00000637699 CACNA1IQ9P0X4 2223 aa21.47■■□□□ 1.03
CLN3-262ENST00000637699 TTLL13PA6NNM8 815 aa21.46■■□□□ 1.03
CLN3-262ENST00000637699 PTGESO14684 152 aa21.46■■□□□ 1.03
CLN3-262ENST00000637699 ADAM12O43184 909 aa21.46■■□□□ 1.03
CLN3-262ENST00000637699 HNRNPA1P09651 372 aaKnown RBP eCLIP21.46■■□□□ 1.03
CLN3-262ENST00000637699 STARD6P59095 220 aa21.46■■□□□ 1.03
CLN3-262ENST00000637699 TMEM132AQ24JP5 1023 aa21.46■■□□□ 1.03
CLN3-262ENST00000637699 PPP4R3CPQ6ZMV5 832 aa21.46■■□□□ 1.03
CLN3-262ENST00000637699 FGF13Q92913 245 aa21.46■■□□□ 1.03
CLN3-262ENST00000637699 CXCL16Q9H2A7 254 aa21.46■■□□□ 1.03
CLN3-262ENST00000637699 WNT7AO00755 349 aa21.45■■□□□ 1.02
CLN3-262ENST00000637699 NEMFO60524 1076 aa21.45■■□□□ 1.02
CLN3-262ENST00000637699 THP07101 528 aa21.45■■□□□ 1.02
CLN3-262ENST00000637699 XRCC6P12956 609 aaKnown RBP eCLIP21.45■■□□□ 1.02
CLN3-262ENST00000637699 FDPSP14324 419 aaKnown RBP21.45■■□□□ 1.02
CLN3-262ENST00000637699 ZBTB8OSQ8IWT0 167 aa21.45■■□□□ 1.02
CLN3-262ENST00000637699 PRIMPOLQ96LW4 560 aa21.45■■□□□ 1.02
CLN3-262ENST00000637699 FZD8Q9H461 694 aa21.45■■□□□ 1.02
CLN3-262ENST00000637699 PDZD7Q9H5P4 517 aa21.45■■□□□ 1.02
CLN3-262ENST00000637699 USP20Q9Y2K6 914 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms