RNA–Protein interactions for RNA: ENST00000600528.1

COPE-210, Transcript of coatomer protein complex subunit epsilon, human

TSL 3

Gene COPE, Length 261 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPE-210	ENST00000600528	MINDY3	Q9H8M7	445 aa		10.43	□□□□□ -0.74
COPE-210	ENST00000600528	SPATA6	Q9NWH7	488 aa	Predicted RBP	10.43	□□□□□ -0.74
COPE-210	ENST00000600528	MIOS	Q9NXC5	875 aa		10.43	□□□□□ -0.74
COPE-210	ENST00000600528	CDH7	Q9ULB5	785 aa		10.43	□□□□□ -0.74
COPE-210	ENST00000600528	PRG3	Q9Y2Y8	225 aa	Predicted RBP	10.43	□□□□□ -0.74
COPE-210	ENST00000600528	MTF2	Q9Y483	593 aa	Predicted RBP	10.43	□□□□□ -0.74
COPE-210	ENST00000600528	COL4A3BP	Q9Y5P4	624 aa		10.43	□□□□□ -0.74
COPE-210	ENST00000600528	SPTBN2	O15020	2390 aa		10.43	□□□□□ -0.74
COPE-210	ENST00000600528	CCDC194	A0A1B0GVG4	234 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	ARL5C	A6NH57	179 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	FAM170B	A6NMN3	283 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	DDX11L8	A8MPP1	907 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528		F8W810	466 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	TBX3	O15119	743 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	TBC1D4	O60343	1298 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	ITGA4	P13612	1032 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	FSHR	P23945	695 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	GJB2	P29033	226 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	CSTF1	Q05048	431 aa	Known RBP	10.42	□□□□□ -0.74
COPE-210	ENST00000600528	FZD5	Q13467	585 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	TRIM29	Q14134	588 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	PCBP1	Q15365	356 aa	Known RBP eCLIP	10.42	□□□□□ -0.74	4e-8	■■■□□ 17.8
COPE-210	ENST00000600528	MLF2	Q15773	248 aa	Predicted RBP	10.42	□□□□□ -0.74
COPE-210	ENST00000600528	ST3GAL2	Q16842	350 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	USP41	Q3LFD5	358 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	PPP4R3A	Q6IN85	833 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	MTSS1L	Q765P7	747 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	GSTCD	Q8NEC7	633 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	ST13P5	Q8NFI4	369 aa	Predicted RBP	10.42	□□□□□ -0.74
COPE-210	ENST00000600528	PRPF31	Q8WWY3	499 aa	Known RBP	10.42	□□□□□ -0.74
COPE-210	ENST00000600528	SECISBP2L	Q93073	1101 aa	Known RBP	10.42	□□□□□ -0.74
COPE-210	ENST00000600528	GJA10	Q969M2	543 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	GAD1	Q99259	594 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	NELL2	Q99435	816 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	COLEC11	Q9BWP8	271 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	GPR62	Q9BZJ7	368 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	DHX33	Q9H6R0	707 aa	Known RBP	10.42	□□□□□ -0.74
COPE-210	ENST00000600528	LTB4R2	Q9NPC1	389 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	SMG5	Q9UPR3	1016 aa	Known RBP	10.42	□□□□□ -0.74
COPE-210	ENST00000600528	IPP	Q9Y573	584 aa		10.42	□□□□□ -0.74
COPE-210	ENST00000600528	MTCL1	Q9Y4B5	1905 aa	Known RBP	10.42	□□□□□ -0.74
COPE-210	ENST00000600528	DCDC2B	A2VCK2	349 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	DKC1	O60832	514 aa	Known RBP eCLIP	10.41	□□□□□ -0.74
COPE-210	ENST00000600528	HNRNPA1	P09651	372 aa	Known RBP eCLIP	10.41	□□□□□ -0.74
COPE-210	ENST00000600528	RPS9	P46781	194 aa	Known RBP	10.41	□□□□□ -0.74
COPE-210	ENST00000600528	PSMC5	P62195	406 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	PFKP	Q01813	784 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	CREM	Q03060	361 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	ZBTB41	Q5SVQ8	909 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	FUT10	Q6P4F1	479 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	MAMSTR	Q6ZN01	415 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	GRASP	Q7Z6J2	395 aa	Predicted RBP	10.41	□□□□□ -0.74
COPE-210	ENST00000600528	FGF13	Q92913	245 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	B3GALT6	Q96L58	329 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	FAM20A	Q96MK3	541 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	AIFM3	Q96NN9	605 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	FAM126A	Q9BYI3	521 aa	Predicted RBP	10.41	□□□□□ -0.74
COPE-210	ENST00000600528	PARD6A	Q9NPB6	346 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	PRMT8	Q9NR22	394 aa	Predicted RBP	10.41	□□□□□ -0.74
COPE-210	ENST00000600528	FBXW11	Q9UKB1	542 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	CDV3	Q9UKY7	258 aa	Known RBP	10.41	□□□□□ -0.74
COPE-210	ENST00000600528	PPME1	Q9Y570	386 aa		10.41	□□□□□ -0.74
COPE-210	ENST00000600528	SHISA7	A6NL88	538 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	ASAP2	O43150	1006 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	NR1I2	O75469	434 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	POU2F2	P09086	479 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	SRGAP2C	P0DJJ0	459 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	PDC	P20941	246 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	AXL	P30530	894 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	HOXA9	P31269	272 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	KRT2	P35908	639 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	MLH1	P40692	756 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	SCNN1G	P51170	649 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	LAMTOR4	Q0VGL1	99 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	UBXN2B	Q14CS0	331 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	NPY5R	Q15761	445 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	NEK8	Q86SG6	692 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	EXOC8	Q8IYI6	725 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	ZNF579	Q8NAF0	562 aa	Known RBP	10.4	□□□□□ -0.74
COPE-210	ENST00000600528	ETNPPL	Q8TBG4	499 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	SLC7A3	Q8WY07	619 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	CCDC51	Q96ER9	411 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	C8orf76	Q96K31	380 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	ZFP42	Q96MM3	310 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	EIF2A	Q9BY44	585 aa	Known RBP	10.4	□□□□□ -0.74
COPE-210	ENST00000600528	FOXD4L1	Q9NU39	408 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	DAXX	Q9UER7	740 aa	Predicted RBP	10.4	□□□□□ -0.74
COPE-210	ENST00000600528	GIT1	Q9Y2X7	761 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	COL4A3	Q01955	1670 aa		10.4	□□□□□ -0.74
COPE-210	ENST00000600528	PATJ	Q8NI35	1801 aa		10.4	□□□□□ -0.75
COPE-210	ENST00000600528	MIA3	Q5JRA6	1907 aa		10.39	□□□□□ -0.75
COPE-210	ENST00000600528	CFAP47	Q6ZTR5	3102 aa		10.39	□□□□□ -0.75
COPE-210	ENST00000600528	NCAM2	O15394	837 aa		10.39	□□□□□ -0.75
COPE-210	ENST00000600528	TSPAN1	O60635	241 aa		10.39	□□□□□ -0.75
COPE-210	ENST00000600528	BAG4	O95429	457 aa	Known RBP	10.39	□□□□□ -0.75
COPE-210	ENST00000600528	TDGF1	P13385	188 aa		10.39	□□□□□ -0.75
COPE-210	ENST00000600528	RPL17	P18621	184 aa	Known RBP	10.39	□□□□□ -0.75
COPE-210	ENST00000600528	CD72	P21854	359 aa		10.39	□□□□□ -0.75
COPE-210	ENST00000600528	TARS	P26639	723 aa	Known RBP	10.39	□□□□□ -0.75
COPE-210	ENST00000600528	FOSB	P53539	338 aa		10.39	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms