RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 SLC44A3Q8N4M1 653 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 BSNDQ8WZ55 320 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 NXPE3Q969Y0 559 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 RTP3Q9BQQ7 232 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 POLR3CQ9BUI4 534 aaPredicted RBP13.01□□□□□ -0.33
CLIP3-204ENST00000590559 APOL6Q9BWW8 343 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 PRKD2Q9BZL6 878 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 TRIM6Q9C030 488 aaPredicted RBP13.01□□□□□ -0.33
CLIP3-204ENST00000590559 CCDC113Q9H0I3 377 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 CXCL16Q9H2A7 254 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 MFSD1Q9H3U5 465 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 TUFT1Q9NNX1 390 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 GVINP1Q7Z2Y8 2422 aa13.01□□□□□ -0.33
CLIP3-204ENST00000590559 PTPRZ1P23471 2315 aaPredicted RBP13□□□□□ -0.33
CLIP3-204ENST00000590559 SPDYE4A6NLX3 237 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 ANHXE9PGG2 379 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 USO1O60763 962 aaKnown RBP13□□□□□ -0.33
CLIP3-204ENST00000590559 NR1I2O75469 434 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 TUSC3Q13454 348 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 HSP90AA2PQ14568 343 aaPredicted RBP13□□□□□ -0.33
CLIP3-204ENST00000590559 ELMSAN1Q6PJG2 1045 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 PALB2Q86YC2 1186 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 SIX5Q8N196 739 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 MCPH1Q8NEM0 835 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 SMG7Q92540 1137 aaKnown RBP13□□□□□ -0.33
CLIP3-204ENST00000590559 RABGGTAQ92696 567 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 STAMQ92783 540 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 PDZD7Q9H5P4 517 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 PRMT7Q9NVM4 692 aaPredicted RBP13□□□□□ -0.33
CLIP3-204ENST00000590559 KLK14Q9P0G3 267 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 CACNG4Q9UBN1 327 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 FBXW11Q9UKB1 542 aa13□□□□□ -0.33
CLIP3-204ENST00000590559 ZMYND10O75800 440 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 MYBP10242 640 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 LAMP2P13473 410 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 RPL17P18621 184 aaKnown RBP12.99□□□□□ -0.33
CLIP3-204ENST00000590559 RPA1P27694 616 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 GBP2P32456 591 aaPredicted RBP12.99□□□□□ -0.33
CLIP3-204ENST00000590559 CREMQ03060 361 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 HTR4Q13639 388 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 PRSS55Q6UWB4 352 aaPredicted RBP12.99□□□□□ -0.33
CLIP3-204ENST00000590559 FRMD5Q7Z6J6 570 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 DTWD2Q8NBA8 298 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 FLCNQ8NFG4 579 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 LNX1Q8TBB1 728 aaPredicted RBP12.99□□□□□ -0.33
CLIP3-204ENST00000590559 RIN2Q8WYP3 895 aaPredicted RBP12.99□□□□□ -0.33
CLIP3-204ENST00000590559 PIK3R5Q8WYR1 880 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 NACC1Q96RE7 527 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 CLSTN3Q9BQT9 956 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLIP3-204ENST00000590559 DLGAP2Q9P1A6 1054 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 PARP2Q9UGN5 583 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 MIA3Q5JRA6 1907 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 PDCD11Q14690 1871 aaKnown RBP12.99□□□□□ -0.33
CLIP3-204ENST00000590559 PATJQ8NI35 1801 aa12.99□□□□□ -0.33
CLIP3-204ENST00000590559 SF3B1O75533 1304 aaKnown RBP eCLIP12.98□□□□□ -0.33
CLIP3-204ENST00000590559 LRRIQ4A6NIV6 560 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 KIF4AO95239 1232 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 SRFP11831 508 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 ATP2B1P20020 1258 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 IGFBP6P24592 240 aaPredicted RBP12.98□□□□□ -0.33
CLIP3-204ENST00000590559 ORC2Q13416 577 aaPredicted RBP12.98□□□□□ -0.33
CLIP3-204ENST00000590559 ANGPT1Q15389 498 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 CD300LGQ6UXG3 332 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 C4orf32Q8N8J7 132 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 SNX27Q96L92 541 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 C2orf40Q9H1Z8 148 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 SLC2A4RGQ9NR83 387 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 SNTG2Q9NY99 539 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 DAXXQ9UER7 740 aaPredicted RBP12.98□□□□□ -0.33
CLIP3-204ENST00000590559 CACNA1AO00555 2505 aa12.98□□□□□ -0.33
CLIP3-204ENST00000590559 COL4A3Q01955 1670 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 CITO14578 2027 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 ACKR2O00590 384 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 N4BP3O15049 544 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 TADA2AO75478 443 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 RECQL4O94761 1208 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 THP07101 528 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 CFHP08603 1231 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 POU2F2P09086 479 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 CYP11B2P19099 503 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 MUTP22033 750 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 HOXA9P31269 272 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 MCM7P33993 719 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 NAMPTP43490 491 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 NEK4P51957 841 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 ECM1Q16610 540 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 EEF1DP3Q658K8 133 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 PHLDB3Q6NSJ2 640 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 PADI6Q6TGC4 694 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 MAEAQ7L5Y9 396 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 GLYCTKQ8IVS8 523 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 CCDC43Q96MW1 224 aaKnown RBP12.97□□□□□ -0.33
CLIP3-204ENST00000590559 TTPALQ9BTX7 342 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 FBXL21Q9UKT6 434 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 USP20Q9Y2K6 914 aa12.97□□□□□ -0.33
CLIP3-204ENST00000590559 ZFP37Q9Y6Q3 630 aaPredicted RBP12.97□□□□□ -0.33
CLIP3-204ENST00000590559 CACNA1IQ9P0X4 2223 aa12.96□□□□□ -0.33
CLIP3-204ENST00000590559 CASTOR2A6NHX0 329 aa12.96□□□□□ -0.33
CLIP3-204ENST00000590559 TMEM189-UBE2V1I3L0A0 370 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms