RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 IRAK3Q9Y616 596 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 PLXNA4Q9HCM2 1894 aa22.11■■□□□ 1.13
NUP88-204ENST00000572290 PTGESO14684 152 aa22.1■■□□□ 1.13
NUP88-204ENST00000572290 SPTLC2O15270 562 aa22.1■■□□□ 1.13
NUP88-204ENST00000572290 MBTPS2O43462 519 aa22.1■■□□□ 1.13
NUP88-204ENST00000572290 ZNF131P52739 623 aa22.1■■□□□ 1.13
NUP88-204ENST00000572290 NCKAP1LP55160 1127 aa22.1■■□□□ 1.13
NUP88-204ENST00000572290 SMAD4Q13485 552 aaKnown RBP22.1■■□□□ 1.13
NUP88-204ENST00000572290 KCNC3Q14003 757 aa22.1■■□□□ 1.13
NUP88-204ENST00000572290 TMEM87AQ8NBN3 555 aa22.1■■□□□ 1.13
NUP88-204ENST00000572290 TCHPQ9BT92 498 aa22.1■■□□□ 1.13
NUP88-204ENST00000572290 PPP6R2O75170 966 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 TBCAO75347 108 aaKnown RBP22.09■■□□□ 1.13
NUP88-204ENST00000572290 YEATS4O95619 227 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 THP07101 528 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 MCF2P10911 925 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 PROZP22891 400 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 GRM5P41594 1212 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 COASYQ13057 564 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 TUSC3Q13454 348 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 LLGL2Q6P1M3 1020 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 MPZL3Q6UWV2 235 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 TMEM184AQ6ZMB5 413 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 CCDC73Q6ZRK6 1079 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 HAUS6Q7Z4H7 955 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 ZBTB33Q86T24 672 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 HERC2P3Q9BVR0 1158 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 CCDC94Q9BW85 323 aaPredicted RBP22.09■■□□□ 1.13
NUP88-204ENST00000572290 ZHX3Q9H4I2 956 aa22.09■■□□□ 1.13
NUP88-204ENST00000572290 CLASP2O75122 1294 aaKnown RBP22.08■■□□□ 1.13
NUP88-204ENST00000572290 TOM1L1O75674 476 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 SOD2P04179 222 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 SCP2P22307 547 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 YARSP54577 528 aaKnown RBP22.08■■□□□ 1.13
NUP88-204ENST00000572290 PKP1Q13835 747 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 PTPN14Q15678 1187 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 SMAD2Q15796 467 aaKnown RBP22.08■■□□□ 1.13
NUP88-204ENST00000572290 FOXD4L6Q3SYB3 417 aaPredicted RBP22.08■■□□□ 1.13
NUP88-204ENST00000572290 FOXD4L3Q6VB84 417 aaPredicted RBP22.08■■□□□ 1.13
NUP88-204ENST00000572290 ZPBP2Q6X784 338 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 FAM178BQ8IXR5 827 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 CEP120Q8N960 986 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 CASP10Q92851 521 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 KCNN1Q92952 543 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 CXCL16Q9H2A7 254 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 HCFC2Q9Y5Z7 792 aa22.08■■□□□ 1.13
NUP88-204ENST00000572290 F8W810 466 aa22.07■■□□□ 1.12
NUP88-204ENST00000572290 K7ENM7 598 aa22.07■■□□□ 1.12
NUP88-204ENST00000572290 ABLIM1O14639 778 aa22.07■■□□□ 1.12
NUP88-204ENST00000572290 TRAK2O60296 914 aa22.07■■□□□ 1.12
NUP88-204ENST00000572290 BRD1O95696 1058 aa22.07■■□□□ 1.12
NUP88-204ENST00000572290 HARSP12081 509 aaKnown RBP22.07■■□□□ 1.12
NUP88-204ENST00000572290 OSTNP61366 133 aa22.07■■□□□ 1.12
NUP88-204ENST00000572290 ANKRD54Q6NXT1 300 aa22.07■■□□□ 1.12
NUP88-204ENST00000572290 SV2BQ7L1I2 683 aa22.07■■□□□ 1.12
NUP88-204ENST00000572290 SMRP1Q8NCR6 262 aa22.07■■□□□ 1.12
NUP88-204ENST00000572290 ZBTB45Q96K62 511 aaPredicted RBP22.07■■□□□ 1.12
NUP88-204ENST00000572290 PANK2Q9BZ23 570 aa22.07■■□□□ 1.12
NUP88-204ENST00000572290 MRPL17Q9NRX2 175 aaKnown RBP22.07■■□□□ 1.12
NUP88-204ENST00000572290 TOPORSQ9NS56 1045 aaPredicted RBP22.07■■□□□ 1.12
NUP88-204ENST00000572290 CASTOR2A6NHX0 329 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 EFEMP2O95967 443 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 URODP06132 367 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 STAT6P42226 847 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 HSP90AA2PQ14568 343 aaPredicted RBP22.06■■□□□ 1.12
NUP88-204ENST00000572290 NAB2Q15742 525 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 DYMQ7RTS9 669 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 TAS1R1Q7RTX1 841 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 RNF168Q8IYW5 571 aaPredicted RBP22.06■■□□□ 1.12
NUP88-204ENST00000572290 RABGGTAQ92696 567 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 BICD1Q96G01 975 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 EMILIN2Q9BXX0 1053 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 ANKFY1Q9P2R3 1169 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 CACNG4Q9UBN1 327 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 PRKAG3Q9UGI9 489 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 ADAM28Q9UKQ2 775 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 SSX2IPQ9Y2D8 614 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 ATG2AQ2TAZ0 1938 aa22.06■■□□□ 1.12
NUP88-204ENST00000572290 CLDN3O15551 220 aa22.05■■□□□ 1.12
NUP88-204ENST00000572290 LILRB3O75022 631 aa22.05■■□□□ 1.12
NUP88-204ENST00000572290 TADA2AO75478 443 aa22.05■■□□□ 1.12
NUP88-204ENST00000572290 GLUD2P49448 558 aa22.05■■□□□ 1.12
NUP88-204ENST00000572290 NOLC1Q14978 699 aaKnown RBP eCLIP22.05■■□□□ 1.12
NUP88-204ENST00000572290 GLRA4Q5JXX5 417 aa22.05■■□□□ 1.12
NUP88-204ENST00000572290 ATL3Q6DD88 541 aa22.05■■□□□ 1.12
NUP88-204ENST00000572290 FUT10Q6P4F1 479 aa22.05■■□□□ 1.12
NUP88-204ENST00000572290 DDX12PQ92771 950 aa22.05■■□□□ 1.12
NUP88-204ENST00000572290 ACAP3Q96P50 834 aa22.05■■□□□ 1.12
NUP88-204ENST00000572290 PAAF1Q9BRP4 392 aa22.05■■□□□ 1.12
NUP88-204ENST00000572290 TBX20Q9UMR3 447 aa22.05■■□□□ 1.12
NUP88-204ENST00000572290 A0A087X0B3 334 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 MYMKA6NI61 221 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 C2CD2LO14523 706 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 CUTAO60888 179 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 HOXB8P17481 243 aaPredicted RBP22.04■■□□□ 1.12
NUP88-204ENST00000572290 ABCD1P33897 745 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 MATR3P43243 847 aaKnown RBP eCLIP22.04■■□□□ 1.12
NUP88-204ENST00000572290 MCL1Q07820 350 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 KIAA1841Q6NSI8 718 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 PPFIBP1Q86W92 1011 aa22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms