RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 FAM198AQ9UFP1 575 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 BCS1LQ9Y276 419 aa11.52□□□□□ -0.57
CCDC40-207ENST00000572253 GREB1LQ9C091 1923 aaPredicted RBP11.51□□□□□ -0.57
CCDC40-207ENST00000572253 DDX39AO00148 427 aaKnown RBP11.51□□□□□ -0.57
CCDC40-207ENST00000572253 IPO5O00410 1097 aaKnown RBP11.51□□□□□ -0.57
CCDC40-207ENST00000572253 MAPK13O15264 365 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 SNX1Q13596 522 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 TNFAIP8L3Q5GJ75 292 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 SAMD1Q6SPF0 538 aaPredicted RBP11.51□□□□□ -0.57
CCDC40-207ENST00000572253 CD101Q93033 1021 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 NT5C1BQ96P26 610 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 RIT2Q99578 217 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 NOP53Q9NZM5 478 aaKnown RBP11.51□□□□□ -0.57
CCDC40-207ENST00000572253 ANAPC5Q9UJX4 755 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 SYNPO2Q9UMS6 1093 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 GSTTP1A0A1W2PQM5 241 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 ANKRD63C9JTQ0 380 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 ALDH1B1P30837 517 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 MAPK4P31152 587 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 NAA25Q14CX7 972 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 NSMFQ6X4W1 530 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 C1orf54Q8WWF1 131 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 TCRBV7S2A1N4TA0A589 114 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 NPM3O75607 178 aaKnown RBP11.51□□□□□ -0.57
CCDC40-207ENST00000572253 BRAFP15056 766 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 ADCY8P40145 1251 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 COPS2P61201 443 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 RRP1BQ14684 758 aaKnown RBP11.51□□□□□ -0.57
CCDC40-207ENST00000572253 PPP1R21Q6ZMI0 780 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 ZNF365Q70YC5 407 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 SLC17A8Q8NDX2 589 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 SLCO2A1Q92959 643 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 BTBD6Q96KE9 485 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 CBWD1Q9BRT8 395 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 DDX23Q9BUQ8 820 aaKnown RBP11.51□□□□□ -0.57
CCDC40-207ENST00000572253 TCEAL9Q9UHQ7 104 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 NOCTQ9UK39 431 aaKnown RBP11.51□□□□□ -0.57
CCDC40-207ENST00000572253 SUFUQ9UMX1 484 aa11.51□□□□□ -0.57
CCDC40-207ENST00000572253 FSCN2O14926 492 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 TTC4O95801 387 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 RPSAP08865 295 aaKnown RBP11.5□□□□□ -0.57
CCDC40-207ENST00000572253 PLS3P13797 630 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 NPR1P16066 1061 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 CHRNB2P17787 502 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 STRN3Q13033 797 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 CRYMQ14894 314 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 ZDHHC14Q8IZN3 488 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 STRA6Q9BX79 667 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 DBNDD1Q9H9R9 158 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.5□□□□□ -0.57
CCDC40-207ENST00000572253 KLRG2A4D1S0 409 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-207ENST00000572253 P4HBP07237 508 aaKnown RBP11.5□□□□□ -0.57
CCDC40-207ENST00000572253 ARP10275 920 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 NCALDP61601 193 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 ATP11AP98196 1134 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 CDR2Q01850 454 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 MYO1EQ12965 1108 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 FBF1Q8TES7 1133 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 KAT5Q92993 513 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 GRAMD1AQ96CP6 724 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 TRAIPQ9BWF2 469 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 TMEM117Q9H0C3 514 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 PMM2O15305 246 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 VIL1P09327 827 aaKnown RBP11.5□□□□□ -0.57
CCDC40-207ENST00000572253 FMO1Q01740 532 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 ZNF268Q14587 947 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-207ENST00000572253 ZKSCAN8Q15776 578 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-207ENST00000572253 KRT39Q6A163 491 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 HAUS6Q7Z4H7 955 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 SLC47A2Q86VL8 602 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 GDAP1Q8TB36 358 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 CKAP2Q8WWK9 683 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 SHC3Q92529 594 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 FAM81BQ96LP2 452 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 TGS1Q96RS0 853 aaKnown RBP11.5□□□□□ -0.57
CCDC40-207ENST00000572253 ANAPC7Q9UJX3 599 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 CEP83Q9Y592 693 aa11.5□□□□□ -0.57
CCDC40-207ENST00000572253 POLRMTO00411 1230 aaKnown RBP11.49□□□□□ -0.57
CCDC40-207ENST00000572253 IGF2BP3O00425 579 aaKnown RBP eCLIP11.49□□□□□ -0.57
CCDC40-207ENST00000572253 KRT5P13647 590 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 CYP11B1P15538 503 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 CETN2P41208 172 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 ACAD10Q6JQN1 1059 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 SH3BP5LQ7L8J4 393 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 DAW1Q8N136 415 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 TRIM11Q96F44 468 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 PKD2L1Q9P0L9 805 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 CCND1P24385 295 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 ITGA8P53708 1063 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 IL9RQ01113 521 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 PTK6Q13882 451 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 SETDB1Q15047 1291 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 LLGL1Q15334 1064 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 GRIPAP1Q4V328 841 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 ANKRD35Q8N283 1001 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 CCDC127Q96BQ5 260 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 MTFR1LQ9H019 292 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 TMOD2Q9NZR1 351 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 WRAP73Q9P2S5 460 aaPredicted RBP11.49□□□□□ -0.57
CCDC40-207ENST00000572253 A0A1W2PRG0 241 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms