RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 C9IYK1 514 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 GPR182O15218 404 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 SPTLC2O15270 562 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 NARSO43776 548 aaKnown RBP15.33■□□□□ 0.04
CLN3-235ENST00000568497 SP9P0CG40 484 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 ATXN1P54253 815 aaKnown RBP15.33■□□□□ 0.04
CLN3-235ENST00000568497 SLC12A3P55017 1021 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 MBTD1Q05BQ5 628 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 MAPK7Q13164 816 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 BMS1Q14692 1282 aaKnown RBP15.33■□□□□ 0.04
CLN3-235ENST00000568497 TMC5Q6UXY8 1006 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 OTOP3Q7RTS5 596 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 MRPL43Q8N983 215 aaKnown RBP15.33■□□□□ 0.04
CLN3-235ENST00000568497 ZNF396Q96N95 335 aaPredicted RBP15.33■□□□□ 0.04
CLN3-235ENST00000568497 KCNK12Q9HB15 430 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 SPG21Q9NZD8 308 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 CA14Q9ULX7 337 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 CFAP47Q6ZTR5 3102 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 FRYLO94915 3013 aa15.33■□□□□ 0.04
CLN3-235ENST00000568497 DENND4AQ7Z401 1863 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.32■□□□□ 0.04
CLN3-235ENST00000568497 KINO60870 393 aaKnown RBP15.32■□□□□ 0.04
CLN3-235ENST00000568497 DCNP07585 359 aaKnown RBP15.32■□□□□ 0.04
CLN3-235ENST00000568497 XRCC6P12956 609 aaKnown RBP eCLIP15.32■□□□□ 0.04
CLN3-235ENST00000568497 LONP1P36776 959 aaKnown RBP15.32■□□□□ 0.04
CLN3-235ENST00000568497 PEX3P56589 373 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 PTENP60484 403 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 FAM189BP81408 668 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 ODR4Q5SWX8 454 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 HYIQ5T013 277 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 SHC4Q6S5L8 630 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 C1orf186Q6ZWK4 172 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 GPBP1Q86WP2 473 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 ABI1Q8IZP0 508 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 LRRC43Q8N309 656 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 KRI1Q8N9T8 703 aaKnown RBP15.32■□□□□ 0.04
CLN3-235ENST00000568497 TCP11Q8WWU5 503 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 JPH2Q9BR39 696 aaPredicted RBP15.32■□□□□ 0.04
CLN3-235ENST00000568497 EIF2AQ9BY44 585 aaKnown RBP15.32■□□□□ 0.04
CLN3-235ENST00000568497 ELAC1Q9H777 363 aaKnown RBP15.32■□□□□ 0.04
CLN3-235ENST00000568497 TBC1D17Q9HA65 648 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 TMEM161AQ9NX61 479 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 RALYQ9UKM9 306 aaKnown RBP15.32■□□□□ 0.04
CLN3-235ENST00000568497 HES2Q9Y543 173 aa15.32■□□□□ 0.04
CLN3-235ENST00000568497 DCDC2BA2VCK2 349 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 CCDC169A6NNP5 214 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 TSPAN1O60635 241 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 BMP15O95972 392 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 EPCAMP16422 314 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 CASP1P29466 404 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 AFF1P51825 1210 aaKnown RBP15.31■□□□□ 0.04
CLN3-235ENST00000568497 AMHR2Q16671 573 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 UBXN11Q5T124 520 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 AXDND1Q5T1B0 1012 aaPredicted RBP15.31■□□□□ 0.04
CLN3-235ENST00000568497 TWF2Q6IBS0 349 aaKnown RBP15.31■□□□□ 0.04
CLN3-235ENST00000568497 ZNF410Q86VK4 478 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 RAD54LQ92698 747 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 CALML4Q96GE6 196 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 APOL6Q9BWW8 343 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 TMEM117Q9H0C3 514 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 CXCL16Q9H2A7 254 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 IKZF4Q9H2S9 585 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 ZHX3Q9H4I2 956 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 PCDHA7Q9UN72 937 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 FANCMQ8IYD8 2048 aa15.31■□□□□ 0.04
CLN3-235ENST00000568497 KRBA1A5PL33 1030 aa15.3■□□□□ 0.04
CLN3-235ENST00000568497 CXCL14O95715 111 aa15.3■□□□□ 0.04
CLN3-235ENST00000568497 HOXA11P31270 313 aaPredicted RBP15.3■□□□□ 0.04
CLN3-235ENST00000568497 PHKA2P46019 1235 aa15.3■□□□□ 0.04
CLN3-235ENST00000568497 COL9A2Q14055 689 aaPredicted RBP15.3■□□□□ 0.04
CLN3-235ENST00000568497 EEF1DP3Q658K8 133 aa15.3■□□□□ 0.04
CLN3-235ENST00000568497 DYMQ7RTS9 669 aa15.3■□□□□ 0.04
CLN3-235ENST00000568497 ECHDC2Q86YB7 292 aa15.3■□□□□ 0.04
CLN3-235ENST00000568497 C1orf210Q8IVY1 113 aa15.3■□□□□ 0.04
CLN3-235ENST00000568497 SYT2Q8N9I0 419 aaPredicted RBP15.3■□□□□ 0.04
CLN3-235ENST00000568497 SUMF1Q8NBK3 374 aa15.3■□□□□ 0.04
CLN3-235ENST00000568497 AK8Q96MA6 479 aa15.3■□□□□ 0.04
CLN3-235ENST00000568497 RNF39Q9H2S5 420 aa15.3■□□□□ 0.04
CLN3-235ENST00000568497 WNT16Q9UBV4 365 aa15.3■□□□□ 0.04
CLN3-235ENST00000568497 GPR179Q6PRD1 2367 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 MYMKA6NI61 221 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 SLC16A4O15374 487 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 HOXA2O43364 376 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 ZSCAN20P17040 1043 aaPredicted RBP15.29■□□□□ 0.04
CLN3-235ENST00000568497 ARF4P18085 180 aaPredicted RBP15.29■□□□□ 0.04
CLN3-235ENST00000568497 SFPQP23246 707 aaKnown RBP eCLIP15.29■□□□□ 0.04
CLN3-235ENST00000568497 DDIT3P35638 169 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 ME1P48163 572 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 CLLU1OSQ5K130 101 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 VARS2Q5ST30 1063 aaKnown RBP15.29■□□□□ 0.04
CLN3-235ENST00000568497 RRAGBQ5VZM2 374 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 LRRC55Q6ZSA7 311 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 TAS1R3Q7RTX0 852 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 GRAMD1CQ8IYS0 662 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 TMEM130Q8N3G9 435 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 MCPH1Q8NEM0 835 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 DEPTORQ8TB45 409 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 FEZF2Q8TBJ5 459 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 HELQQ8TDG4 1101 aa15.29■□□□□ 0.04
CLN3-235ENST00000568497 LEO1Q8WVC0 666 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms