RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SLFN14P0C7P3 912 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 ATF7P17544 494 aaPredicted RBP18.93■□□□□ 0.62
CLN3-217ENST00000565354 ZNF131P52739 623 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 AMHR2Q16671 573 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 APBB1IPQ7Z5R6 666 aaPredicted RBP18.93■□□□□ 0.62
CLN3-217ENST00000565354 SFR1Q86XK3 245 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 HACE1Q8IYU2 909 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 ABI1Q8IZP0 508 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 CNNM3Q8NE01 707 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 PGBD4Q96DM1 585 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 ASIC4Q96FT7 647 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 BICD1Q96G01 975 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 CCDC113Q9H0I3 377 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 IRF2BPLQ9H1B7 796 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 TLE6Q9H808 572 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 PANK4Q9NVE7 773 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 ARHGAP28Q9P2N2 729 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 SEL1LQ9UBV2 794 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 PCDHGC5Q9Y5F6 944 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 CNTNAP2Q9UHC6 1331 aa18.93■□□□□ 0.62
CLN3-217ENST00000565354 FAM186AA6NE01 2351 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 HOXA11P31270 313 aaPredicted RBP18.92■□□□□ 0.62
CLN3-217ENST00000565354 ABCD1P33897 745 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 VCPP55072 806 aaKnown RBP18.92■□□□□ 0.62
CLN3-217ENST00000565354 NCKAP1LP55160 1127 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 SLC27A1Q6PCB7 646 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 HAUS6Q7Z4H7 955 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 CDR2LQ86X02 465 aaPredicted RBP18.92■□□□□ 0.62
CLN3-217ENST00000565354 TMEM161BQ8NDZ6 487 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 SUSD6Q92537 303 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 DNAJC19Q96DA6 116 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 NTPCRQ9BSD7 190 aaKnown RBP18.92■□□□□ 0.62
CLN3-217ENST00000565354 MRPL4Q9BYD3 311 aaKnown RBP18.92■□□□□ 0.62
CLN3-217ENST00000565354 TRIM9Q9C026 710 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 GOLPH3LQ9H4A5 285 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 MRPL44Q9H9J2 332 aaKnown RBP18.92■□□□□ 0.62
CLN3-217ENST00000565354 PCDHB2Q9Y5E7 798 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 PLXNA3P51805 1871 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 DMDP11532 3685 aa18.92■□□□□ 0.62
CLN3-217ENST00000565354 FAM237AA0A1B0GTK4 181 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 ACTN4O43707 911 aaKnown RBP18.91■□□□□ 0.62
CLN3-217ENST00000565354 NPTXRO95502 500 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 EOMESO95936 686 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 MAPTP10636 758 aaKnown RBP18.91■□□□□ 0.62
CLN3-217ENST00000565354 SCP2P22307 547 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 AVPR2P30518 371 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 GATMP50440 423 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 FAM189BP81408 668 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 LONRF3Q496Y0 759 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 ATF7IP2Q5U623 682 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 C7orf25Q9BPX7 421 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 TRAIPQ9BWF2 469 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 BLZF1Q9H2G9 400 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 TBC1D7Q9P0N9 293 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 MYO10Q9HD67 2058 aa18.91■□□□□ 0.62
CLN3-217ENST00000565354 A0A1B0GUA9 196 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 FSD2A1L4K1 749 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 TBKBP1A7MCY6 615 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 ZNF202O95125 648 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 NMT1P30419 496 aaKnown RBP18.9■□□□□ 0.62
CLN3-217ENST00000565354 MATR3P43243 847 aaKnown RBP eCLIP18.9■□□□□ 0.62
CLN3-217ENST00000565354 UBE3AQ05086 875 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 GRAMD1CQ8IYS0 662 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 VN1R2Q8NFZ6 395 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 MICAL1Q8TDZ2 1067 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 ATOH1Q92858 354 aaPredicted RBP18.9■□□□□ 0.62
CLN3-217ENST00000565354 PAGE5Q96GU1 130 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 TCHPQ9BT92 498 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 APOL6Q9BWW8 343 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 EIF2AQ9BY44 585 aaKnown RBP18.9■□□□□ 0.62
CLN3-217ENST00000565354 USP20Q9Y2K6 914 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 PCDHB12Q9Y5F1 795 aa18.9■□□□□ 0.62
CLN3-217ENST00000565354 PER2O15055 1255 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 GCNT3O95395 438 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 FGFR1P11362 822 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 ITGA4P13612 1032 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 RBM10P98175 930 aaKnown RBP18.89■□□□□ 0.61
CLN3-217ENST00000565354 PTPN21Q16825 1174 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 UBXN11Q5T124 520 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 SPOUT1Q5T280 376 aaKnown RBP18.89■□□□□ 0.61
CLN3-217ENST00000565354 NT5DC1Q5TFE4 455 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 STXBP4Q6ZWJ1 553 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 LPPQ93052 612 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 CCDC47Q96A33 483 aaKnown RBP18.89■□□□□ 0.61
CLN3-217ENST00000565354 GBP4Q96PP9 640 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 CDCA3Q99618 268 aaPredicted RBP18.89■□□□□ 0.61
CLN3-217ENST00000565354 TARS2Q9BW92 718 aaKnown RBP18.89■□□□□ 0.61
CLN3-217ENST00000565354 PDZD7Q9H5P4 517 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 TLR9Q9NR96 1032 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 TBX20Q9UMR3 447 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 IPPQ9Y573 584 aa18.89■□□□□ 0.61
CLN3-217ENST00000565354 ZNF623O75123 536 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 CASP1P29466 404 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 LIG4P49917 911 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 FAM160A1Q05DH4 1040 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 CUL4BQ13620 913 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 DUSP6Q16828 381 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 DCAF4L1Q3SXM0 396 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 ZNF568Q3ZCX4 644 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 KANK3Q6NY19 840 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms