RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 MKNK1Q9BUB5 465 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 TRIM6Q9C030 488 aaPredicted RBP18.07■□□□□ 0.48
VPS4A-202ENST00000562754 IL23AQ9NPF7 189 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 TRIP11Q15643 1979 aa18.07■□□□□ 0.48
VPS4A-202ENST00000562754 PDCD11Q14690 1871 aaKnown RBP18.07■□□□□ 0.48
VPS4A-202ENST00000562754 PTPRSQ13332 1948 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.06■□□□□ 0.48
VPS4A-202ENST00000562754 PFKMP08237 780 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 CLTAP09496 248 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 PSMC2P35998 433 aaKnown RBP18.06■□□□□ 0.48
VPS4A-202ENST00000562754 RAB27AP51159 221 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 EPHB4P54760 987 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 WNT7BP56706 349 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 PPIGQ13427 754 aaKnown RBP eCLIP18.06■□□□□ 0.484e-8■■□□□ 12.8
VPS4A-202ENST00000562754 ENOX2Q16206 610 aaKnown RBP18.06■□□□□ 0.48
VPS4A-202ENST00000562754 C16orf59Q7L2K0 433 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 ECHDC2Q86YB7 292 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 BRSK2Q8IWQ3 736 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 RDH13Q8NBN7 331 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 PLEKHO2Q8TD55 490 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 APOL6Q9BWW8 343 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 RNF39Q9H2S5 420 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 KIAA1586Q9HCI6 787 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 SNTG2Q9NY99 539 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 FRMD4BQ9Y2L6 1034 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 TTC3P53804 2025 aa18.06■□□□□ 0.48
VPS4A-202ENST00000562754 A0A0U1RQF3 1178 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 MEIS3P2A8K0S8 358 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 ENPP3O14638 875 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 MAPK13O15264 365 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 ZNF623O75123 536 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 RECQL4O94761 1208 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 FGFR1OPO95684 399 aaKnown RBP18.05■□□□□ 0.48
VPS4A-202ENST00000562754 LDHAP00338 332 aaKnown RBP18.05■□□□□ 0.48
VPS4A-202ENST00000562754 CXCL8P10145 99 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 EPB41P11171 864 aaKnown RBP18.05■□□□□ 0.48
VPS4A-202ENST00000562754 ATP1A3P13637 1013 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 MARSP56192 900 aaKnown RBP18.05■□□□□ 0.48
VPS4A-202ENST00000562754 CYP24A1Q07973 514 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 FAM43BQ6ZT52 329 aaPredicted RBP18.05■□□□□ 0.48
VPS4A-202ENST00000562754 MRPL10Q7Z7H8 261 aaKnown RBP18.05■□□□□ 0.48
VPS4A-202ENST00000562754 ZNF598Q86UK7 904 aaKnown RBP18.05■□□□□ 0.48
VPS4A-202ENST00000562754 LPPQ93052 612 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 MFSD14AQ96MC6 490 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 CCDC94Q9BW85 323 aaPredicted RBP18.05■□□□□ 0.48
VPS4A-202ENST00000562754 C1orf112Q9NSG2 853 aa18.05■□□□□ 0.48
VPS4A-202ENST00000562754 RBAKQ9NYW8 714 aaPredicted RBP18.05■□□□□ 0.48
VPS4A-202ENST00000562754 ZNF233A6NK53 670 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 KCNJ18B7U540 433 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 GOLGA6L19H0YKK7 550 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 GNA14O95837 355 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 IBSPP21815 317 aaPredicted RBP18.04■□□□□ 0.48
VPS4A-202ENST00000562754 AKAP5P24588 427 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 FAM189BP81408 668 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 KCNJ12Q14500 433 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 KYAT1Q16773 422 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 CCDC40Q4G0X9 1142 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 SLC24A5Q71RS6 500 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 FAM114A1Q8IWE2 563 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 RPUSD2Q8IZ73 545 aaKnown RBP18.04■□□□□ 0.48
VPS4A-202ENST00000562754 SNX27Q96L92 541 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 CXCL16Q9H2A7 254 aa18.04■□□□□ 0.48
VPS4A-202ENST00000562754 IKBKEQ14164 716 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 PSMD6Q15008 389 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 SLC10A6Q3KNW5 377 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 TCP11X2Q5H9J9 407 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 C1orf220Q5T0J3 134 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.03■□□□□ 0.48
VPS4A-202ENST00000562754 AGMOQ6ZNB7 445 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 FRMD5Q7Z6J6 570 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 TRIM59Q8IWR1 403 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 FAM84AQ96KN4 292 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 ACAP3Q96P50 834 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 RPF1Q9H9Y2 349 aaKnown RBP18.03■□□□□ 0.48
VPS4A-202ENST00000562754 PDE11AQ9HCR9 933 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 RNF19AQ9NV58 838 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 ARMCX3Q9UH62 379 aaPredicted RBP18.03■□□□□ 0.48
VPS4A-202ENST00000562754 NR2E3Q9Y5X4 410 aa18.03■□□□□ 0.48
VPS4A-202ENST00000562754 PTPRJQ12913 1337 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 ABHD14A-ACY1A0A1B0GW23 586 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 TTC26A0AVF1 554 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 CEP290O15078 2479 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 TRIM49P0CI25 452 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 TRIM49CP0CI26 452 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 SKIP12755 728 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 ITGA4P13612 1032 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 EEF1GP26641 437 aaKnown RBP18.02■□□□□ 0.48
VPS4A-202ENST00000562754 MCCD1P59942 119 aaPredicted RBP18.02■□□□□ 0.48
VPS4A-202ENST00000562754 DLG4P78352 724 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 POU5F1Q01860 360 aaKnown RBP18.02■□□□□ 0.48
VPS4A-202ENST00000562754 BFSP1Q12934 665 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 HSP90AA2PQ14568 343 aaPredicted RBP18.02■□□□□ 0.48
VPS4A-202ENST00000562754 KRT31Q15323 416 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 TMEM240Q5SV17 173 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 ZNF365Q70YC5 407 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 INTS8Q75QN2 995 aaKnown RBP18.02■□□□□ 0.48
VPS4A-202ENST00000562754 APTXQ7Z2E3 356 aaKnown RBP18.02■□□□□ 0.48
VPS4A-202ENST00000562754 RNF169Q8NCN4 708 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 METTL14Q9HCE5 456 aaKnown RBP18.02■□□□□ 0.48
VPS4A-202ENST00000562754 TOPORSQ9NS56 1045 aaPredicted RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms