RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RNF19BQ6ZMZ0 732 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 SND1Q7KZF4 910 aaKnown RBP eCLIP5.39□□□□□ -1.55
LIMS1-214ENST00000542845 LONP2Q86WA8 852 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 CCDC60Q8IWA6 550 aaPredicted RBP5.39□□□□□ -1.55
LIMS1-214ENST00000542845 DEPDC4Q8N2C3 294 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 HDAC7Q8WUI4 952 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 HNRNPLLQ8WVV9 542 aaKnown RBP5.39□□□□□ -1.55
LIMS1-214ENST00000542845 FAM3CQ92520 227 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 RABGGTAQ92696 567 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 GATA6Q92908 595 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 TCEAL3Q969E4 200 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 EVI5LQ96CN4 794 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 RRP36Q96EU6 259 aaKnown RBP5.39□□□□□ -1.55
LIMS1-214ENST00000542845 PGBD1Q96JS3 809 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 USB1Q9BQ65 265 aaKnown RBP5.39□□□□□ -1.55
LIMS1-214ENST00000542845 MXRA8Q9BRK3 442 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 MKNK1Q9BUB5 465 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 HERC2P3Q9BVR0 1158 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 KRT23Q9C075 422 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 CHRDQ9H2X0 955 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 CHMP4BQ9H444 224 aaKnown RBP5.39□□□□□ -1.55
LIMS1-214ENST00000542845 DCTPP1Q9H773 170 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 BRD9Q9H8M2 597 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 PSTPIP2Q9H939 334 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 RBM12Q9NTZ6 932 aaKnown RBP5.39□□□□□ -1.55
LIMS1-214ENST00000542845 HCFC1R1Q9NWW0 138 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 ZDHHC7Q9NXF8 308 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 MAP10Q9P2G4 905 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 STK39Q9UEW8 545 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 SEC63Q9UGP8 760 aaKnown RBP5.39□□□□□ -1.55
LIMS1-214ENST00000542845 TCEAL9Q9UHQ7 104 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 NOVA2Q9UNW9 492 aaKnown RBP5.39□□□□□ -1.55
LIMS1-214ENST00000542845 VPS9D1Q9Y2B5 631 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 PCDHB9Q9Y5E1 797 aa5.39□□□□□ -1.55
LIMS1-214ENST00000542845 SPEGQ15772 3267 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 A0A087WZ62 844 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 ERICH2A1L162 156 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 IFIT3O14879 490 aaKnown RBP5.38□□□□□ -1.55
LIMS1-214ENST00000542845 MAGEB2O15479 319 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 XYLBO75191 536 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 CCNE2O96020 404 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 MX1P20591 662 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 CCNE1P24864 410 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 GPC3P51654 580 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 ITGB3BPQ13352 177 aaPredicted RBP5.38□□□□□ -1.55
LIMS1-214ENST00000542845 GRM4Q14833 912 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 LIN9Q5TKA1 542 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 DAB2IPQ5VWQ8 1189 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 DESI1Q6ICB0 168 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 TANGO2Q6ICL3 276 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 BLOC1S3Q6QNY0 202 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 PRSS55Q6UWB4 352 aaPredicted RBP5.38□□□□□ -1.55
LIMS1-214ENST00000542845 LYPD8Q6UX82 237 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 CYB5R4Q7L1T6 521 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 CATSPER4Q7RTX7 472 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 KBTBD6Q86V97 674 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 CEP57Q86XR8 500 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 CMTR1Q8N1G2 835 aaKnown RBP5.38□□□□□ -1.55
LIMS1-214ENST00000542845 TTC8Q8TAM2 541 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 PGBD4Q96DM1 585 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 LRIG1Q96JA1 1093 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 FDXACB1Q9BRP7 624 aaPredicted RBP5.38□□□□□ -1.55
LIMS1-214ENST00000542845 EDEM2Q9BV94 578 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 SLC4A5Q9BY07 1137 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 GCOM2Q9BZD3 368 aaPredicted RBP5.38□□□□□ -1.55
LIMS1-214ENST00000542845 RXFP1Q9HBX9 757 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 SENP2Q9HC62 589 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 AGO4Q9HCK5 861 aaKnown RBP5.38□□□□□ -1.55
LIMS1-214ENST00000542845 CHST12Q9NRB3 414 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 FAM105AQ9NUU6 356 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 GABBR1Q9UBS5 961 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 KLK13Q9UKR3 277 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 MRPS23Q9Y3D9 190 aaKnown RBP5.38□□□□□ -1.55
LIMS1-214ENST00000542845 SAMM50Q9Y512 469 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 NFASCO94856 1347 aa5.38□□□□□ -1.55
LIMS1-214ENST00000542845 PDCD11Q14690 1871 aaKnown RBP5.38□□□□□ -1.55
LIMS1-214ENST00000542845 GCN1Q92616 2671 aaKnown RBP5.37□□□□□ -1.55
LIMS1-214ENST00000542845 TDRD15B5MCY1 1934 aaKnown RBP5.37□□□□□ -1.55
LIMS1-214ENST00000542845 IGKV6D-21A0A0A0MT36 114 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 SHISA7A6NL88 538 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 NR1I2O75469 434 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 ECI2O75521 394 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 RPP40O75818 363 aaKnown RBP5.37□□□□□ -1.55
LIMS1-214ENST00000542845 EPN2O95208 641 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 PRB1P04280 392 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 C8AP07357 584 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 SFPQP23246 707 aaKnown RBP eCLIP5.37□□□□□ -1.55
LIMS1-214ENST00000542845 GDI1P31150 447 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 MPLP40238 635 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 DSG1Q02413 1049 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 CREB5Q02930 508 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 GAS6Q14393 721 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 SEC23AQ15436 765 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 IMMTQ16891 758 aaKnown RBP5.37□□□□□ -1.55
LIMS1-214ENST00000542845 USP41Q3LFD5 358 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 PABPC1LQ4VXU2 614 aaKnown RBP5.37□□□□□ -1.55
LIMS1-214ENST00000542845 TMEM164Q5U3C3 297 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 LILRA6Q6PI73 481 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 AGMOQ6ZNB7 445 aa5.37□□□□□ -1.55
LIMS1-214ENST00000542845 Q6ZS52 159 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms