RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 PCSK7Q16549 785 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 CTC1Q2NKJ3 1217 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 MDH1BQ5I0G3 518 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 EARS2Q5JPH6 523 aaKnown RBP3.98□□□□□ -1.77
MCF2-210ENST00000536274 CLEC4GQ6UXB4 293 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 MARK2Q7KZI7 788 aaKnown RBP3.98□□□□□ -1.77
MCF2-210ENST00000536274 SH3RF1Q7Z6J0 888 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 CCDC25Q86WR0 208 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 EXOC8Q8IYI6 725 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 TNS4Q8IZW8 715 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 NME8Q8N427 588 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 C7orf57Q8NEG2 295 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 SH3TC2Q8TF17 1288 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 GIPC3Q8TF64 312 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 GLG1Q92896 1179 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 ATP6V0A1Q93050 837 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 TLCD1Q96CP7 247 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 PURBQ96QR8 312 aaKnown RBP3.98□□□□□ -1.77
MCF2-210ENST00000536274 SMC6Q96SB8 1091 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 DNAJC7Q99615 494 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 BEGAINQ9BUH8 593 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 EPB41L4BQ9H329 900 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 SNX25Q9H3E2 840 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 SEMA4AQ9H3S1 761 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 THAP9Q9H5L6 903 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 SAGE1Q9NXZ1 904 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 COMMD3-BMI1R4GMX3 469 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 MYH4Q9Y623 1939 aa3.98□□□□□ -1.77
MCF2-210ENST00000536274 SLC26A4O43511 780 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 SUN1O94901 812 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 LCA5LO95447 670 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 GSTA2P09210 222 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 DDX5P17844 614 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 HOXD13P35453 343 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 TMED10P49755 219 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 EIF2B2P49770 351 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 PLTPP55058 493 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 POLR2FP61218 127 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 RELAQ04206 551 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 PTK7Q13308 1070 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 BIRC3Q13489 604 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 THOC5Q13769 683 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 SF3B4Q15427 424 aaKnown RBP eCLIP3.97□□□□□ -1.77
MCF2-210ENST00000536274 MTHFSDQ2M296 383 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 AGBL2Q5U5Z8 902 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 USPL1Q5W0Q7 1092 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CCSAPQ6IQ19 270 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 AADACL2Q6P093 401 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 KLHDC10Q6PID8 442 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CACNA2D4Q7Z3S7 1137 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CABP7Q86V35 215 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 FAM186BQ8IYM0 893 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 MYOCDQ8IZQ8 938 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 GALNT4Q8N4A0 578 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ERMNQ8TAM6 284 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CASP10Q92851 521 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 MRRFQ96E11 262 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 CATSPER2Q96P56 530 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ERP44Q9BS26 406 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 BRIP1Q9BX63 1249 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 GRIP2Q9C0E4 1043 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 KLHL4Q9C0H6 718 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ASCC2Q9H1I8 757 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 WNT8AQ9H1J5 351 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ISCUQ9H1K1 167 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 USP29Q9HBJ7 922 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 RXFP1Q9HBX9 757 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 XAB2Q9HCS7 855 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 TRPC7Q9HCX4 862 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 TRNAU1APQ9NX07 287 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 HMG20BQ9P0W2 317 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CTTNBP2NLQ9P2B4 639 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 DACH1Q9UI36 760 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 STX8Q9UNK0 236 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 SNX24Q9Y343 169 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 AK5Q9Y6K8 562 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 LAMA4Q16363 1823 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CACNA1SQ13698 1873 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 COL1A1P02452 1464 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 TMEM120BA0PK00 339 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 RASA4BC9J798 803 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 RASA4O43374 803 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 RANBP6O60518 1105 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 PPP6R2O75170 966 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ALDH2P05091 517 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 PORP16435 677 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 DPEP1P16444 411 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 TCP1P17987 556 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 NELFEP18615 380 aaKnown RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 BDNFP23560 247 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 KLRC1P26715 233 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ERCC5P28715 1186 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 TNFRSF8P28908 595 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 GTF2H1P32780 548 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 MMP13P45452 471 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 ENTPD1P49961 510 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 CDK7P50613 346 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 BCAMP50895 628 aa3.97□□□□□ -1.77
MCF2-210ENST00000536274 HIRAP54198 1017 aaPredicted RBP3.97□□□□□ -1.77
MCF2-210ENST00000536274 ANTXR2P58335 489 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms