RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 PTGDRQ13258 359 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 RILPL1Q5EBL4 403 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ADALQ6DHV7 355 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SCARA5Q6ZMJ2 495 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CYB5R4Q7L1T6 521 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 TRIM50Q86XT4 487 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 NPAS4Q8IUM7 802 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 EGFL6Q8IUX8 553 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 PLEKHM2Q8IWE5 1019 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 TMEM143Q96AN5 459 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 EPSTI1Q96J88 318 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CORO1BQ9BR76 489 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 BCO2Q9BYV7 579 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 MIR1-1HGQ9H1L0 117 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 RANBP17Q9H2T7 1088 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 BRD9Q9H8M2 597 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 PPANQ9NQ55 473 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 BTBD7Q9P203 1132 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 NCKAP1Q9Y2A7 1128 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 H3BRB1 525 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SMPD1P17405 629 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ALDH3A1P30838 453 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 EPHB1P54762 984 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ACTR2P61160 394 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 PTPN11Q06124 597 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 POSTNQ15063 836 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CNNM4Q6P4Q7 775 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 EFCAB13Q8IY85 973 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 TRIB2Q92519 343 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 GPRASP2Q96D09 838 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 HEXIM2Q96MH2 286 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 NUCKS1Q9H1E3 243 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 TUT1Q9H6E5 874 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CYP4F11Q9HBI6 524 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 NCOA5Q9HCD5 579 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ZFATQ9P243 1243 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SLC25A13Q9UJS0 675 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 HPCAL4Q9UM19 191 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 PCDHA10Q9Y5I2 948 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 NFIBO00712 420 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SH2B2O14492 632 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ORC4O43929 436 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 RNASEH1O60930 286 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 FSHRP23945 695 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CYLC1P35663 651 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ITIH3Q06033 890 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CTXN3Q4LDR2 81 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 C17orf99Q6UX52 265 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 FAM178BQ8IXR5 827 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ABRAQ8N0Z2 381 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 VPS52Q8N1B4 723 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SYNPOQ8N3V7 929 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 NEK11Q8NG66 645 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 TRIM7Q9C029 511 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 AGO4Q9HCK5 861 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ALG13Q9NP73 1137 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 UTP6Q9NYH9 597 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SPG21Q9NZD8 308 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 PRG3Q9Y2Y8 225 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 TPRP12270 2363 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 COL11A1P12107 1806 aaPredicted RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 LRRC37AA6NMS7 1700 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CLDN3O15551 220 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ASAP2O43150 1006 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 RLBP1P12271 317 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CD52P31358 61 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SYKP43405 635 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 NT5C2P49902 561 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SPAG1Q07617 926 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 NOLC1Q14978 699 aaKnown RBP eCLIP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 UAP1L1Q3KQV9 507 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 HABP4Q5JVS0 413 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 FAM171A1Q5VUB5 890 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 FBXW10Q5XX13 1052 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SLFN12LQ6IEE8 588 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 XRRA1Q6P2D8 792 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 MTHFD1LQ6UB35 978 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 WDR75Q8IWA0 830 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 CNPY4Q8N129 248 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 STAG2Q8N3U4 1231 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ZSCAN1Q8NBB4 408 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 PIGOQ8TEQ8 1089 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 COPS5Q92905 334 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 SMC6Q96SB8 1091 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 OSMRQ99650 979 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ATXN3LQ9H3M9 355 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 DONSONQ9NYP3 566 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 NRBP1Q9UHY1 535 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 PRR23AA6NEV1 266 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 TIMM44O43615 452 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 GLUD1P00367 558 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 LGALS2P05162 132 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 ALADP13716 330 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 GCFC2P16383 781 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 GJA5P36382 358 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 QARSP47897 775 aaKnown RBP3.17□□□□□ -1.9
NEDD4-208ENST00000508342 TMEM132DQ14C87 1099 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 EMC2Q15006 297 aa3.17□□□□□ -1.9
NEDD4-208ENST00000508342 RPS6KA2Q15349 733 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms