RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	CLCN4	P51793	760 aa		11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	ATP2C1	P98194	919 aa	Predicted RBP	11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	TUSC3	Q13454	348 aa		11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	ZRSR1	Q15695	479 aa	Known RBP	11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	USP41	Q3LFD5	358 aa		11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	LARP1B	Q659C4	914 aa	Known RBP	11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	ARL6IP4	Q66PJ3	421 aa	Known RBP	11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	GPR65	Q8IYL9	337 aa		11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	TDRD5	Q8NAT2	981 aa	Known RBP	11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	SLC22A17	Q8WUG5	538 aa		11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	FBXL18	Q96ME1	805 aa		11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	IPO9	Q96P70	1041 aa	Known RBP	11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	KCNH6	Q9H252	994 aa		11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	PDZD7	Q9H5P4	517 aa		11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	MARCH5	Q9NX47	278 aa		11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	KLK14	Q9P0G3	267 aa		11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	ADAM28	Q9UKQ2	775 aa		11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.47	□□□□□ -0.57
NR1I3-222	ENST00000506018	C2orf16	Q68DN1	1984 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	PLXNA3	P51805	1871 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018		E9PMD0	336 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	SLC26A4	O43511	780 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	GLUD1	P00367	558 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	C1R	P00736	705 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	PDC	P20941	246 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	PLA2G5	P39877	138 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	SMTN	P53814	917 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	YARS	P54577	528 aa	Known RBP	11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	PEX3	P56589	373 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	ZXDA	P98168	799 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	DSG1	Q02413	1049 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	ELAVL2	Q12926	359 aa	Known RBP	11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	ECM1	Q16610	540 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	ATF7IP2	Q5U623	682 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	FUT10	Q6P4F1	479 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	PDXDC1	Q6P996	788 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	CYP26C1	Q6V0L0	522 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	C15orf39	Q6ZRI6	1047 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	TRIM67	Q6ZTA4	783 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	BSND	Q8WZ55	320 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	ACSF2	Q96CM8	615 aa	Predicted RBP	11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	AK8	Q96MA6	479 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	VN1R3	Q9BXE9	311 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	MRPL4	Q9BYD3	311 aa	Known RBP	11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	CCDC113	Q9H0I3	377 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	POMK	Q9H5K3	350 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	KMT5A	Q9NQR1	393 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	TOPORS	Q9NS56	1045 aa	Predicted RBP	11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	MIOS	Q9NXC5	875 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	SNTG2	Q9NY99	539 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	KCND2	Q9NZV8	630 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	RAPGEFL1	Q9UHV5	662 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	UST	Q9Y2C2	406 aa		11.46	□□□□□ -0.57
NR1I3-222	ENST00000506018	DENND4A	Q7Z401	1863 aa		11.46	□□□□□ -0.58
NR1I3-222	ENST00000506018	TECTA	O75443	2155 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	VWA3A	A6NCI4	1184 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018		H0YCG3	227 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	HIP1R	O75146	1068 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	RECQL4	O94761	1208 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	SP100	P23497	879 aa	Predicted RBP	11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	SIGLEC14	Q08ET2	396 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	STRN3	Q13033	797 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	PTPN21	Q16825	1174 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	RINT1	Q6NUQ1	792 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	TMC5	Q6UXY8	1006 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	CCDC149	Q6ZUS6	474 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	BRAP	Q7Z569	592 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	SUGP1	Q8IWZ8	645 aa	Known RBP	11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	RASSF8	Q8NHQ8	419 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	HDAC7	Q8WUI4	952 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	STAM	Q92783	540 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	CALML4	Q96GE6	196 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	CCDC94	Q9BW85	323 aa	Predicted RBP	11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	TMEM134	Q9H6X4	195 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	TNFSF13B	Q9Y275	285 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	GDA	Q9Y2T3	454 aa		11.45	□□□□□ -0.58
NR1I3-222	ENST00000506018	TMEM221	A6NGB7	291 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	PP2D1	A8MPX8	630 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018		M0R296	226 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	LILRB3	O75022	631 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	GUCY2C	P25092	1073 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	CDC25A	P30304	524 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	UBA7	P41226	1012 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	NPTX2	P47972	431 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	MTMR3	Q13615	1198 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	ZNF568	Q3ZCX4	644 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	HYI	Q5T013	277 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	KIAA0319	Q5VV43	1072 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	OTOP3	Q7RTS5	596 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	BMP8A	Q7Z5Y6	402 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	GPR149	Q86SP6	731 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	UBALD2	Q8IYN6	164 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	RNF168	Q8IYW5	571 aa	Predicted RBP	11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	C12orf76	Q8N812	135 aa	Predicted RBP	11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	GSTCD	Q8NEC7	633 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	PBXIP1	Q96AQ6	731 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	UROC1	Q96N76	676 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	TCHP	Q9BT92	498 aa		11.44	□□□□□ -0.58
NR1I3-222	ENST00000506018	KIFC3	Q9BVG8	833 aa		11.44	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms