RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 SMARCC2Q8TAQ2 1214 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 NPLOC4Q8TAT6 608 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 DDX11Q96FC9 970 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 MMP19Q99542 508 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 SPATA25Q9BR10 227 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 R3HDMLQ9H3Y0 253 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 DNAJC18Q9H819 358 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 UPF2Q9HAU5 1272 aaKnown RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 ST7Q9NRC1 585 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 NUDT5Q9UKK9 219 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 NAP1L2Q9ULW6 460 aaPredicted RBP5.8□□□□□ -1.48
CSMD3-208ENST00000497026 LOC285556D6RIA3 1793 aa5.8□□□□□ -1.48
CSMD3-208ENST00000497026 ZSWIM8A7E2V4 1837 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 MANSC4A6NHS7 340 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-208ENST00000497026 C22orf46C9J442 243 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 FOXD2O60548 495 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-208ENST00000497026 CDK11BP21127 795 aaKnown RBP5.79□□□□□ -1.48
CSMD3-208ENST00000497026 MSNP26038 577 aaKnown RBP5.79□□□□□ -1.48
CSMD3-208ENST00000497026 ADD2P35612 726 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 SLURP1P55000 103 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 CCDC173Q0VFZ6 552 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 SREBF2Q12772 1141 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 MAP3K12Q12852 859 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 TTF1Q15361 905 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-208ENST00000497026 MAPKAPK5Q8IW41 473 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 SCYL3Q8IZE3 742 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 TGFBRAP1Q8WUH2 860 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 HNRNPLLQ8WVV9 542 aaKnown RBP5.79□□□□□ -1.48
CSMD3-208ENST00000497026 BRI3BPQ8WY22 251 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 HOOK2Q96ED9 719 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 PTPN18Q99952 460 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 TINF2Q9BSI4 451 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 RNF38Q9H0F5 515 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 ECHDC1Q9NTX5 307 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 PAG1Q9NWQ8 432 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 ZNF532Q9HCE3 1301 aa5.79□□□□□ -1.48
CSMD3-208ENST00000497026 MYH8P13535 1937 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 LETM1O95202 739 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-208ENST00000497026 GJB6O95452 261 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 BAG3O95817 575 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 IGHDP01880 384 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 FGRP09769 529 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 XRCC6P12956 609 aaKnown RBP eCLIP5.78□□□□□ -1.48
CSMD3-208ENST00000497026 BCL6P41182 706 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 ARID5AQ03989 594 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 PPATQ06203 517 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 DMTNQ08495 405 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 PPIL2Q13356 520 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 SMAD4Q13485 552 aaKnown RBP5.78□□□□□ -1.48
CSMD3-208ENST00000497026 MOGSQ13724 837 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 FXNQ16595 210 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 SHROOM1Q2M3G4 852 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-208ENST00000497026 SLC9C2Q5TAH2 1124 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 TMED8Q6PL24 325 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-208ENST00000497026 B3GNT8Q7Z7M8 397 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 STK32CQ86UX6 486 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 ERO1BQ86YB8 467 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 MCF2L2Q86YR7 1114 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 SMC5Q8IY18 1101 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 LCORLQ8N3X6 602 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 FAM26EQ8N5C1 309 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 NOL10Q9BSC4 688 aaKnown RBP5.78□□□□□ -1.48
CSMD3-208ENST00000497026 GRPEL1Q9HAV7 217 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 FBXL7Q9UJT9 491 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 PALD1Q9ULE6 856 aa5.78□□□□□ -1.48
CSMD3-208ENST00000497026 CCL15-CCL14A0A0B4J2E2 113 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 BTBD19C9JJ37 291 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 DYNC1I1O14576 645 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 SGSM2O43147 1006 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 KIF20AO95235 890 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 LCP1P13796 627 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 MX1P20591 662 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 KCNC1P48547 511 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 INHBEP58166 350 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 CAP1Q01518 475 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 UBE3CQ15386 1083 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 CCL15Q16663 113 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 SLC4A8Q2Y0W8 1093 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 LIPIQ6XZB0 460 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 CEP68Q76N32 757 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 KBTBD3Q8NAB2 608 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 KREMEN2Q8NCW0 462 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 SDR42E1Q8WUS8 393 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 DIO2Q92813 273 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 ZBTB8AQ96BR9 441 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 GCC1Q96CN9 775 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 GTPBP4Q9BZE4 634 aaKnown RBP5.77□□□□□ -1.49
CSMD3-208ENST00000497026 PUS7LQ9H0K6 701 aaKnown RBP5.77□□□□□ -1.49
CSMD3-208ENST00000497026 DHX36Q9H2U1 1008 aaKnown RBP5.77□□□□□ -1.49
CSMD3-208ENST00000497026 ARMT1Q9H993 441 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.77□□□□□ -1.49
CSMD3-208ENST00000497026 LUC7LQ9NQ29 371 aaKnown RBP5.77□□□□□ -1.49
CSMD3-208ENST00000497026 RTEL1Q9NZ71 1219 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 PI4KBQ9UBF8 816 aa5.77□□□□□ -1.49
CSMD3-208ENST00000497026 SAP30BPQ9UHR5 308 aaKnown RBP5.77□□□□□ -1.49
CSMD3-208ENST00000497026 HERC5Q9UII4 1024 aaKnown RBP5.77□□□□□ -1.49
CSMD3-208ENST00000497026 TIMM13Q9Y5L4 95 aaPredicted RBP5.77□□□□□ -1.49
CSMD3-208ENST00000497026 TTC41PQ6P2S7 1318 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms