RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 PTPRHQ9HD43 1115 aa21.34■■□□□ 1.01
USP40-217ENST00000496298 KCNG1Q9UIX4 513 aa21.34■■□□□ 1.01
USP40-217ENST00000496298 MTCL1Q9Y4B5 1905 aaKnown RBP21.33■■□□□ 1.01
USP40-217ENST00000496298 PRR33A8MZF0 331 aa21.33■■□□□ 1.01
USP40-217ENST00000496298 C1RP00736 705 aa21.33■■□□□ 1.01
USP40-217ENST00000496298 SSBP05455 408 aaKnown RBP eCLIP21.33■■□□□ 1.01
USP40-217ENST00000496298 URODP06132 367 aa21.33■■□□□ 1.01
USP40-217ENST00000496298 GLUD2P49448 558 aa21.33■■□□□ 1.01
USP40-217ENST00000496298 ZRSR1Q15695 479 aaKnown RBP21.33■■□□□ 1.01
USP40-217ENST00000496298 APBB1IPQ7Z5R6 666 aaPredicted RBP21.33■■□□□ 1.01
USP40-217ENST00000496298 CABP7Q86V35 215 aa21.33■■□□□ 1.01
USP40-217ENST00000496298 GPR62Q9BZJ7 368 aa21.33■■□□□ 1.01
USP40-217ENST00000496298 CXCL16Q9H2A7 254 aa21.33■■□□□ 1.01
USP40-217ENST00000496298 KMT5AQ9NQR1 393 aa21.33■■□□□ 1.01
USP40-217ENST00000496298 ADAM28Q9UKQ2 775 aa21.33■■□□□ 1.01
USP40-217ENST00000496298 PLXNA3P51805 1871 aa21.32■■□□□ 1
USP40-217ENST00000496298 FAM86C2PA6NEL3 165 aa21.32■■□□□ 1
USP40-217ENST00000496298 THP07101 528 aa21.32■■□□□ 1
USP40-217ENST00000496298 PLA2G4BP0C869 781 aa21.32■■□□□ 1
USP40-217ENST00000496298 KLRC2P26717 231 aa21.32■■□□□ 1
USP40-217ENST00000496298 LONP1P36776 959 aaKnown RBP21.32■■□□□ 1
USP40-217ENST00000496298 MTHFRP42898 656 aa21.32■■□□□ 1
USP40-217ENST00000496298 SF3A1Q15459 793 aaKnown RBP21.32■■□□□ 1
USP40-217ENST00000496298 FUT10Q6P4F1 479 aa21.32■■□□□ 1
USP40-217ENST00000496298 KCNN1Q92952 543 aa21.32■■□□□ 1
USP40-217ENST00000496298 CDK5RAP3Q96JB5 506 aa21.32■■□□□ 1
USP40-217ENST00000496298 RPGRIP1Q96KN7 1286 aa21.32■■□□□ 1
USP40-217ENST00000496298 FBXL18Q96ME1 805 aa21.32■■□□□ 1
USP40-217ENST00000496298 MUTYHQ9UIF7 546 aa21.32■■□□□ 1
USP40-217ENST00000496298 DENND4AQ7Z401 1863 aa21.31■■□□□ 1
USP40-217ENST00000496298 VPS37CA5D8V6 355 aaPredicted RBP21.31■■□□□ 1
USP40-217ENST00000496298 SFI1A8K8P3 1242 aa21.31■■□□□ 1
USP40-217ENST00000496298 TEX28O15482 410 aa21.31■■□□□ 1
USP40-217ENST00000496298 PLS3P13797 630 aa21.31■■□□□ 1
USP40-217ENST00000496298 SYT1P21579 422 aa21.31■■□□□ 1
USP40-217ENST00000496298 PROZP22891 400 aa21.31■■□□□ 1
USP40-217ENST00000496298 HSP90AA2PQ14568 343 aaPredicted RBP21.31■■□□□ 1
USP40-217ENST00000496298 USP41Q3LFD5 358 aa21.31■■□□□ 1
USP40-217ENST00000496298 ARSHQ5FYA8 562 aa21.31■■□□□ 1
USP40-217ENST00000496298 KIAA1841Q6NSI8 718 aa21.31■■□□□ 1
USP40-217ENST00000496298 C12orf76Q8N812 135 aaPredicted RBP21.31■■□□□ 1
USP40-217ENST00000496298 RIPOR3Q96MK2 946 aa21.31■■□□□ 1
USP40-217ENST00000496298 PLIN2Q99541 437 aa21.31■■□□□ 1
USP40-217ENST00000496298 PAAF1Q9BRP4 392 aa21.31■■□□□ 1
USP40-217ENST00000496298 MRPL4Q9BYD3 311 aaKnown RBP21.31■■□□□ 1
USP40-217ENST00000496298 CDH22Q9UJ99 828 aa21.31■■□□□ 1
USP40-217ENST00000496298 CITO14578 2027 aa21.3■■□□□ 1
USP40-217ENST00000496298 C2CD2LO14523 706 aa21.3■■□□□ 1
USP40-217ENST00000496298 ABLIM1O14639 778 aa21.3■■□□□ 1
USP40-217ENST00000496298 SLC16A4O15374 487 aa21.3■■□□□ 1
USP40-217ENST00000496298 BRD1O95696 1058 aa21.3■■□□□ 1
USP40-217ENST00000496298 ADH1AP07327 375 aa21.3■■□□□ 1
USP40-217ENST00000496298 UBA7P41226 1012 aa21.3■■□□□ 1
USP40-217ENST00000496298 GRM5P41594 1212 aa21.3■■□□□ 1
USP40-217ENST00000496298 GRIN1Q05586 938 aa21.3■■□□□ 1
USP40-217ENST00000496298 XKR4Q5GH76 650 aa21.3■■□□□ 1
USP40-217ENST00000496298 RARS2Q5T160 578 aaKnown RBP21.3■■□□□ 1
USP40-217ENST00000496298 ALKAL1Q6UXT8 129 aa21.3■■□□□ 1
USP40-217ENST00000496298 TMEM161BQ8NDZ6 487 aa21.3■■□□□ 1
USP40-217ENST00000496298 LRRC15Q8TF66 581 aa21.3■■□□□ 1
USP40-217ENST00000496298 EDAQ92838 391 aa21.3■■□□□ 1
USP40-217ENST00000496298 PPP1R10Q96QC0 940 aaKnown RBP21.3■■□□□ 1
USP40-217ENST00000496298 TARS2Q9BW92 718 aaKnown RBP21.3■■□□□ 1
USP40-217ENST00000496298 CDT1Q9H211 546 aa21.3■■□□□ 1
USP40-217ENST00000496298 POMKQ9H5K3 350 aa21.3■■□□□ 1
USP40-217ENST00000496298 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.3■■□□□ 1
USP40-217ENST00000496298 FNIP2Q9P278 1114 aa21.3■■□□□ 1
USP40-217ENST00000496298 GDAQ9Y2T3 454 aa21.3■■□□□ 1
USP40-217ENST00000496298 TECTAO75443 2155 aa21.29■■□□□ 1
USP40-217ENST00000496298 C2orf16Q68DN1 1984 aa21.29■■□□□ 1
USP40-217ENST00000496298 TADA2AO75478 443 aa21.29■■□□□ 1
USP40-217ENST00000496298 PAPLNO95428 1278 aa21.29■■□□□ 1
USP40-217ENST00000496298 RESTQ13127 1097 aa21.29■■□□□ 1
USP40-217ENST00000496298 PTPAQ15257 358 aa21.29■■□□□ 1
USP40-217ENST00000496298 ATAT1Q5SQI0 421 aa21.29■■□□□ 1
USP40-217ENST00000496298 KANK3Q6NY19 840 aa21.29■■□□□ 1
USP40-217ENST00000496298 GPR149Q86SP6 731 aa21.29■■□□□ 1
USP40-217ENST00000496298 RABGGTAQ92696 567 aa21.29■■□□□ 1
USP40-217ENST00000496298 CALML4Q96GE6 196 aa21.29■■□□□ 1
USP40-217ENST00000496298 SFXN1Q9H9B4 322 aa21.29■■□□□ 1
USP40-217ENST00000496298 BLOC1S4Q9NUP1 217 aa21.29■■□□□ 1
USP40-217ENST00000496298 CACNG4Q9UBN1 327 aa21.29■■□□□ 1
USP40-217ENST00000496298 RAPGEFL1Q9UHV5 662 aa21.29■■□□□ 1
USP40-217ENST00000496298 ARIH1Q9Y4X5 557 aaPredicted RBP21.29■■□□□ 1
USP40-217ENST00000496298 SF3B1O75533 1304 aaKnown RBP eCLIP21.29■■□□□ 1
USP40-217ENST00000496298 MYO10Q9HD67 2058 aa21.28■■□□□ 1
USP40-217ENST00000496298 MAPTP10636 758 aaKnown RBP21.28■■□□□ 1
USP40-217ENST00000496298 MCF2P10911 925 aa21.28■■□□□ 1
USP40-217ENST00000496298 SMTNP53814 917 aa21.28■■□□□ 1
USP40-217ENST00000496298 RAD51AP2Q09MP3 1159 aa21.28■■□□□ 1
USP40-217ENST00000496298 CMASQ8NFW8 434 aaPredicted RBP21.28■■□□□ 1
USP40-217ENST00000496298 HDAC7Q8WUI4 952 aa21.28■■□□□ 1
USP40-217ENST00000496298 RHOBTB2Q9BYZ6 727 aa21.28■■□□□ 1
USP40-217ENST00000496298 CCSER1Q9C0I3 900 aa21.28■■□□□ 1
USP40-217ENST00000496298 ODF2LQ9ULJ1 636 aa21.28■■□□□ 1
USP40-217ENST00000496298 NR2E1Q9Y466 385 aa21.28■■□□□ 1
USP40-217ENST00000496298 CLIC4Q9Y696 253 aa21.28■■□□□ 1
USP40-217ENST00000496298 VWA8A3KMH1 1905 aa21.27■■□□□ 1
USP40-217ENST00000496298 CASTOR2A6NHX0 329 aa21.27■■□□□ 1
USP40-217ENST00000496298 TMEM189-UBE2V1I3L0A0 370 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms