RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 FAM189BP81408 668 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 KRT17Q04695 432 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 DSC3Q14574 896 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 CALCRLQ16602 461 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 FOXD4L6Q3SYB3 417 aaPredicted RBP9.73□□□□□ -0.85
USP4-213ENST00000488520 ZNF484Q5JVG2 852 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 RARS2Q5T160 578 aaKnown RBP9.73□□□□□ -0.85
USP4-213ENST00000488520 ATL3Q6DD88 541 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 ABHD15Q6UXT9 468 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 FOXD4L3Q6VB84 417 aaPredicted RBP9.73□□□□□ -0.85
USP4-213ENST00000488520 ABI1Q8IZP0 508 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 CASP10Q92851 521 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 FAM20AQ96MK3 541 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 TEKT3Q9BXF9 490 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 RAB34Q9BZG1 259 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 TMEM117Q9H0C3 514 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 MFSD1Q9H3U5 465 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 NGRNQ9NPE2 291 aaKnown RBP9.73□□□□□ -0.85
USP4-213ENST00000488520 RNF19AQ9NV58 838 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 SPG21Q9NZD8 308 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 CHMP5Q9NZZ3 219 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 PCDHA12Q9UN75 941 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 SAMM50Q9Y512 469 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 HCFC2Q9Y5Z7 792 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 COL1A2P08123 1366 aa9.73□□□□□ -0.85
USP4-213ENST00000488520 ZBTB42B2RXF5 422 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 FAM86B1E9PN63 330 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 IPO5O00410 1097 aaKnown RBP9.72□□□□□ -0.85
USP4-213ENST00000488520 LAD1O00515 517 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 TBX3O15119 743 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 GAS7O60861 476 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 CLASP2O75122 1294 aaKnown RBP9.72□□□□□ -0.85
USP4-213ENST00000488520 GPR32O75388 356 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 TDP2O95551 362 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 C22orf31O95567 290 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 F13A1P00488 732 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 FAM86B2P0C5J1 330 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 ZSCAN20P17040 1043 aaPredicted RBP9.72□□□□□ -0.85
USP4-213ENST00000488520 NCLP19338 710 aaKnown RBP9.72□□□□□ -0.85
USP4-213ENST00000488520 FGFR4P22455 802 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 TXKP42681 527 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 CLCN3P51790 818 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 NLRP11P59045 1033 aaKnown RBP9.72□□□□□ -0.85
USP4-213ENST00000488520 CEBPZQ03701 1054 aaKnown RBP9.72□□□□□ -0.85
USP4-213ENST00000488520 SMC1AQ14683 1233 aaKnown RBP9.72□□□□□ -0.85
USP4-213ENST00000488520 TMEM132AQ24JP5 1023 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 EARS2Q5JPH6 523 aaKnown RBP9.72□□□□□ -0.85
USP4-213ENST00000488520 LRCH2Q5VUJ6 765 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 MIS18BP1Q6P0N0 1132 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 DTHD1Q6ZMT9 781 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 FRMD5Q7Z6J6 570 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 UBALD2Q8IYN6 164 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 LRRC71Q8N4P6 559 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 FEZF2Q8TBJ5 459 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 AUTS2Q8WXX7 1259 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 TNFRSF25Q93038 417 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 RIT2Q99578 217 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 ADAM7Q9H2U9 754 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 ELAC1Q9H777 363 aaKnown RBP9.72□□□□□ -0.85
USP4-213ENST00000488520 DNMT3LQ9UJW3 386 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 AKT3Q9Y243 479 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 FRYLO94915 3013 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 ZNF292O60281 2723 aa9.72□□□□□ -0.85
USP4-213ENST00000488520 EP300Q09472 2414 aaPredicted RBP9.71□□□□□ -0.85
USP4-213ENST00000488520 C2orf71A6NGG8 1288 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 PROB1E7EW31 1015 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 DHX15O43143 795 aaKnown RBP9.71□□□□□ -0.86
USP4-213ENST00000488520 CXCL14O95715 111 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 PPM1AP35813 382 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 MTHFRP42898 656 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 STK38Q15208 465 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 LONRF3Q496Y0 759 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 CLLU1OSQ5K130 101 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 EFCAB12Q6NXP0 572 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 ECHDC2Q86YB7 292 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 LRRC43Q8N309 656 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 MRPL43Q8N983 215 aaKnown RBP9.71□□□□□ -0.86
USP4-213ENST00000488520 TMEM87AQ8NBN3 555 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 FLCNQ8NFG4 579 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 HELQQ8TDG4 1101 aa9.71□□□□□ -0.86
USP4-213ENST00000488520 TFIP11Q9UBB9 837 aaKnown RBP9.71□□□□□ -0.86
USP4-213ENST00000488520 DBR1Q9UK59 544 aaKnown RBP9.71□□□□□ -0.86
USP4-213ENST00000488520 GVINP1Q7Z2Y8 2422 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 MSH4O15457 936 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 DKC1O60832 514 aaKnown RBP eCLIP9.7□□□□□ -0.86
USP4-213ENST00000488520 CSDE1O75534 798 aaKnown RBP9.7□□□□□ -0.86
USP4-213ENST00000488520 PSAPP07602 524 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 OR52Z1P0C646 297 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 EPCAMP16422 314 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 NBL1P41271 181 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 PTGIRP43119 386 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 BCAR1P56945 870 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 KRT85P78386 507 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 ITIH3Q06033 890 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 RESTQ13127 1097 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.7□□□□□ -0.86
USP4-213ENST00000488520 MIER3Q7Z3K6 550 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 VPS52Q8N1B4 723 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 SLC39A11Q8N1S5 342 aa9.7□□□□□ -0.86
USP4-213ENST00000488520 TDRD5Q8NAT2 981 aaKnown RBP9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms