RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 FXR1P51114 621 aaKnown RBP eCLIP6.97□□□□□ -1.29
USP48-209ENST00000487880 PER3P56645 1201 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 DSC2Q02487 901 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 TARDBPQ13148 414 aaKnown RBP eCLIP6.97□□□□□ -1.29
USP48-209ENST00000487880 MTM1Q13496 603 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 FAM47AQ5JRC9 791 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 ATAT1Q5SQI0 421 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 B3GNT9Q6UX72 402 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 MAMDC4Q6UXC1 1216 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 DOK3Q7L591 496 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 APBB1IPQ7Z5R6 666 aaPredicted RBP6.97□□□□□ -1.29
USP48-209ENST00000487880 FMNL3Q8IVF7 1028 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 RHOT1Q8IXI2 618 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 ZGPATQ8N5A5 531 aaKnown RBP6.97□□□□□ -1.29
USP48-209ENST00000487880 MAGEB6Q8N7X4 407 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 NSUN6Q8TEA1 469 aaKnown RBP6.97□□□□□ -1.29
USP48-209ENST00000487880 TSR2Q969E8 191 aaKnown RBP6.97□□□□□ -1.29
USP48-209ENST00000487880 HPS3Q969F9 1004 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 LDAHQ9H6V9 325 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 AJAP1Q9UKB5 411 aaPredicted RBP6.97□□□□□ -1.29
USP48-209ENST00000487880 PCDHA13Q9Y5I0 950 aa6.97□□□□□ -1.29
USP48-209ENST00000487880 K7ESM1 405 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 FOXD2O60548 495 aaPredicted RBP6.96□□□□□ -1.3
USP48-209ENST00000487880 DTNBO60941 627 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 GPR32O75388 356 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 IL2RBP14784 551 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 PTPN7P35236 360 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 GPRIN1Q7Z2K8 1008 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 D2HGDHQ8N465 521 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 KAT5Q92993 513 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 RELTQ969Z4 430 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 MRGPRX4Q96LA9 322 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 DMRTA2Q96SC8 542 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 LSM14BQ9BX40 385 aaKnown RBP6.96□□□□□ -1.3
USP48-209ENST00000487880 ANLNQ9NQW6 1124 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 TDP1Q9NUW8 608 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 CHPF2Q9P2E5 772 aa6.96□□□□□ -1.3
USP48-209ENST00000487880 HECAQ9UBI9 543 aaPredicted RBP6.96□□□□□ -1.3
USP48-209ENST00000487880 B5MCH6 92 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 OFD1O75665 1012 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 U2AF1L5P0DN76 240 aaPredicted RBP6.95□□□□□ -1.3
USP48-209ENST00000487880 FPR1P21462 350 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 U2AF1Q01081 240 aaKnown RBP eCLIP6.95□□□□□ -1.31e-7■□□□□ 11.3
USP48-209ENST00000487880 PLP2Q04941 152 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 ELAVL1Q15717 326 aaKnown RBP6.95□□□□□ -1.3
USP48-209ENST00000487880 IFIT1BQ5T764 474 aaKnown RBP6.95□□□□□ -1.3
USP48-209ENST00000487880 ERICH6BQ5W0A0 696 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 SPTY2D1Q68D10 685 aaPredicted RBP6.95□□□□□ -1.3
USP48-209ENST00000487880 PPP4R3AQ6IN85 833 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 MDGA1Q8NFP4 955 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 FBXO18Q8NFZ0 1043 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 IFI44Q8TCB0 444 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 CCHCR1Q8TD31 782 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 MVB12AQ96EY5 273 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 SENP6Q9GZR1 1112 aaPredicted RBP6.95□□□□□ -1.3
USP48-209ENST00000487880 NMRK2Q9NPI5 230 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 TMEM140Q9NV12 185 aa6.95□□□□□ -1.3
USP48-209ENST00000487880 NOB1Q9ULX3 412 aaKnown RBP6.95□□□□□ -1.3
USP48-209ENST00000487880 MYBBP1AQ9BQG0 1328 aaKnown RBP6.95□□□□□ -1.3
USP48-209ENST00000487880 PJA2O43164 708 aa6.94□□□□□ -1.3
USP48-209ENST00000487880 SYN1P17600 705 aa6.94□□□□□ -1.3
USP48-209ENST00000487880 DDCP20711 480 aa6.94□□□□□ -1.3
USP48-209ENST00000487880 ALDH1A3P47895 512 aa6.94□□□□□ -1.3
USP48-209ENST00000487880 ZNF267Q14586 743 aaPredicted RBP6.94□□□□□ -1.3
USP48-209ENST00000487880 OR52N2Q8NGI0 321 aa6.94□□□□□ -1.3
USP48-209ENST00000487880 EDAQ92838 391 aa6.94□□□□□ -1.3
USP48-209ENST00000487880 RAB24Q969Q5 203 aa6.94□□□□□ -1.3
USP48-209ENST00000487880 KRTAP3-1Q9BYR8 98 aa6.94□□□□□ -1.3
USP48-209ENST00000487880 CPEB1Q9BZB8 566 aaKnown RBP6.94□□□□□ -1.3
USP48-209ENST00000487880 MOCS1Q9NZB8 636 aa6.94□□□□□ -1.3
USP48-209ENST00000487880 CXorf49A8MYA2 514 aaPredicted RBP6.93□□□□□ -1.3
USP48-209ENST00000487880 TEX33O43247 280 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 HSPA6P17066 643 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 GNAT2P19087 354 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 ACO1P21399 889 aaKnown RBP6.93□□□□□ -1.3
USP48-209ENST00000487880 EFEMP1Q12805 493 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 MLC1Q15049 377 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 CSRP2Q16527 193 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 BMT2Q1RMZ1 405 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 PGS1Q32NB8 556 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 METTL24Q5JXM2 366 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 C1QL3Q5VWW1 255 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 AFMIDQ63HM1 303 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 ANKS6Q68DC2 871 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 OTUD7BQ6GQQ9 843 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 HTR3DQ70Z44 454 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 TTC7BQ86TV6 843 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 DRC7Q8IY82 874 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 ELOA2Q8IYF1 753 aaPredicted RBP6.93□□□□□ -1.3
USP48-209ENST00000487880 MYO1HQ8N1T3 1032 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 ANKRD35Q8N283 1001 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 ZNF808Q8N4W9 903 aaPredicted RBP6.93□□□□□ -1.3
USP48-209ENST00000487880 SLC35B2Q8TB61 432 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 SLC35G2Q8TBE7 412 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 STON2Q8WXE9 905 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 ST8SIA2Q92186 375 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 MIEF2Q96C03 454 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 RUNDC1Q96C34 613 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 CLIP3Q96DZ5 547 aa6.93□□□□□ -1.3
USP48-209ENST00000487880 LOXL4Q96JB6 756 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms