RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 XDHP47989 1333 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 SFNP31947 248 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 ATXN3P54252 364 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 KDM7AQ6ZMT4 941 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 ABI1Q8IZP0 508 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 FBXL5Q9UKA1 691 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 KLHL41O60662 606 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 SFSWAPQ12872 951 aaKnown RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 MFN1Q8IWA4 741 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 FLCNQ8NFG4 579 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 CHMP2BQ9UQN3 213 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 FAM25AB3EWG3 89 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 FAM25CB3EWG5 89 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 FAM25GB3EWG6 89 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 COPAP53621 1224 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 PPARDQ03181 441 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 ARHGEF6Q15052 776 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 KYNUQ16719 465 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 SLFN13Q68D06 897 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 FMR1NBQ8N0W7 255 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 VCPKMTQ9H867 229 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 KCNH2Q12809 1159 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 EPS8Q12929 822 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 STILQ15468 1287 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 NFKBIL1Q9UBC1 381 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 KNOP1Q1ED39 458 aaKnown RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 TTC39BQ5VTQ0 682 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 PCNX4Q63HM2 1172 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 TTC33Q6PID6 262 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 GPKOWQ92917 476 aaPredicted RBP eCLIP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 INO80BQ9C086 356 aaPredicted RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 ABCB11O95342 1321 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 PSMC3P17980 439 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 POLA2Q14181 598 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 NCF4Q15080 339 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 BTNL9Q6UXG8 535 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 LRRC59Q96AG4 307 aaKnown RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 IFT43Q96FT9 208 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 DDX50Q9BQ39 737 aaKnown RBP14.01□□□□□ -0.17
COL6A3-209ENST00000472056 CEP44Q9C0F1 390 aa14.01□□□□□ -0.17
COL6A3-209ENST00000472056 CNTFP26441 200 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 QKIQ96PU8 341 aaKnown RBP eCLIP14□□□□□ -0.17
COL6A3-209ENST00000472056 AURKCQ9UQB9 309 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 CYP27A1Q02318 531 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 PI4K2BQ8TCG2 481 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 CYP21A2P08686 494 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 HADHAP40939 763 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 TTC23LQ6PF05 361 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 SOX13Q9UN79 622 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 RWDD3Q9Y3V2 267 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 CALB2P22676 271 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 NCKAP1LP55160 1127 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 DHX40Q8IX18 779 aaKnown RBP14□□□□□ -0.17
COL6A3-209ENST00000472056 ZBED8Q8IZ13 594 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 CYGBQ8WWM9 190 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 AGBL1Q96MI9 1066 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 C2orf40Q9H1Z8 148 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 SERPINB13Q9UIV8 391 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 SNX24Q9Y343 169 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 GOLGA8SH3BPF8 625 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 TRIM24O15164 1050 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 AKAP10O43572 662 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 SNUPNO95149 360 aaKnown RBP14□□□□□ -0.17
COL6A3-209ENST00000472056 CTCFP49711 727 aaPredicted RBP14□□□□□ -0.17
COL6A3-209ENST00000472056 LCORLQ8N3X6 602 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 PXDNLA1KZ92 1463 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 A0A1B0GTH6 734 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 LRRC53A6NM62 1247 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 APOL1O14791 398 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 XPO1O14980 1071 aaKnown RBP14□□□□□ -0.17
COL6A3-209ENST00000472056 PDE9AO76083 593 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 PEX5P50542 639 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 LONP2Q86WA8 852 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 SMYD4Q8IYR2 804 aaPredicted RBP14□□□□□ -0.17
COL6A3-209ENST00000472056 KLHL4Q9C0H6 718 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 NMRK1Q9NWW6 199 aa14□□□□□ -0.17
COL6A3-209ENST00000472056 SDC4P31431 198 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 KRT20P35900 424 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 NECTIN1Q15223 517 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 DCAF4Q8WV16 495 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 GRID1Q9ULK0 1009 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 UGGT1Q9NYU2 1555 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 HOXB6P17509 224 aaKnown RBP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 PDIA2Q13087 525 aaKnown RBP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 OLFML2BQ68BL8 750 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 ANKS3Q6ZW76 656 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 COL23A1Q86Y22 540 aaPredicted RBP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 PARD3BQ8TEW8 1205 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 PIK3R5Q8WYR1 880 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 ABHD8Q96I13 439 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 CEP170P1Q96L14 293 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 TRPC7Q9HCX4 862 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 TBC1D22BQ9NU19 505 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 ATXN2Q99700 1313 aaKnown RBP13.99□□□□□ -0.17
COL6A3-209ENST00000472056 NFIBO00712 420 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 KRT14P02533 472 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 KRT6BP04259 564 aa13.99□□□□□ -0.17
COL6A3-209ENST00000472056 OSBPP22059 807 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms