RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SFNP31947 248 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 CDH8P55286 799 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 SCYL2Q6P3W7 929 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 MMS22LQ6ZRQ5 1243 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 EPM2AIP1Q7L775 607 aaPredicted RBP14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 UBL4BQ8N7F7 174 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 C18orf8Q96DM3 657 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 CPB2Q96IY4 423 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 C10orf88Q9H8K7 445 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 SIX2Q9NPC8 291 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 AIPL1Q9NZN9 384 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 UMODL1Q5DID0 1318 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 EIF3DO15371 548 aaKnown RBP eCLIP14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 DGAT1O75907 488 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 ACSL3O95573 720 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 GUCY2CP25092 1073 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 IRX5P78411 483 aaPredicted RBP14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 XKR3Q5GH77 459 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 CATSPERGQ6ZRH7 1159 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 OR5B17Q8NGF7 314 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 CCDC26Q8TAB7 109 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 IQCDQ96DY2 449 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 IWS1Q96ST2 819 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 MMP19Q99542 508 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 ZWILCHQ9H900 591 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 HPCAL4Q9UM19 191 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 PLAAQ9Y263 795 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 MYH4Q9Y623 1939 aa14.75□□□□□ -0.05
CCDC88A-211ENST00000471947 DNAH12Q6ZR08 3092 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 GOLGA8MH3BSY2 632 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 NPM3O75607 178 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 PIAS1O75925 651 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 RGS20O76081 388 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 CCT5P48643 541 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 SMTNL2Q2TAL5 461 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 MCPH1Q8NEM0 835 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 LRRN4Q8WUT4 740 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 RFFLQ8WZ73 363 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 CDCA5Q96FF9 252 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 PCDHB18PQ96TA0 734 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 PORCNQ9H237 461 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 TXNRD2Q9NNW7 524 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 RRM1P23921 792 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 RPS12P25398 132 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 BRD2P25440 801 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 SEMA3FQ13275 785 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 NNTQ13423 1086 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 WDR72Q3MJ13 1102 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 FAM47CQ5HY64 1035 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 CYP4F22Q6NT55 531 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 PARD3BQ8TEW8 1205 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 DYDC1Q8WWB3 177 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 LENG1Q96BZ8 264 aaPredicted RBP14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 UBR3Q6ZT12 1888 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 H0YHG0 523 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 SLC16A3O15427 465 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 TBC1D12O60347 775 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 CFHP08603 1231 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 GPC5P78333 572 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 LACTBP83111 547 aaPredicted RBP14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 GUCY1A3Q02108 690 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 SYCE1Q8N0S2 351 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 RNF10Q8N5U6 811 aaKnown RBP14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 KREMEN1Q96MU8 473 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 XPNPEP1Q9NQW7 623 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 ADAM22Q9P0K1 906 aa14.74□□□□□ -0.05
CCDC88A-211ENST00000471947 C4orf19Q8IY42 314 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 USP38Q8NB14 1042 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 ZIM3Q96PE6 472 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 DAAM1Q9Y4D1 1078 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 TCRBV7S2A1N4TA0A589 114 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 OATP04181 439 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 SUPT20HL2P0C7V6 817 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 SCP2P22307 547 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 ATP13A4Q4VNC1 1196 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 FKBP1CQ5VVH2 108 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 ZBTB8OSQ8IWT0 167 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 MSANTD4Q8NCY6 345 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 BCAS4Q8TDM0 211 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 PWWP2AQ96N64 755 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 KCNK9Q9NPC2 374 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 FBXL5Q9UKA1 691 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 BRWD3Q6RI45 1802 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 FRMD3A2A2Y4 597 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 FLT3P36888 993 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 WNT7BP56706 349 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 ANKRD42Q8N9B4 389 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 ALG3Q92685 438 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 THOC1Q96FV9 657 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 RPGRIP1Q96KN7 1286 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 SUCLA2Q9P2R7 463 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 COG5Q9UP83 839 aa14.73□□□□□ -0.05
CCDC88A-211ENST00000471947 C19orf81C9J6K1 198 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 GNA15P30679 374 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 MMP14P50281 582 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 DR1Q01658 176 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 MAPK6Q16659 721 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 MEI1Q5TIA1 1274 aa14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 TRIM6Q9C030 488 aaPredicted RBP14.72□□□□□ -0.05
CCDC88A-211ENST00000471947 NOVA2Q9UNW9 492 aaKnown RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms