RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 TSPAN18Q96SJ8 248 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 BPIFA3Q9BQP9 254 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 MKNK1Q9BUB5 465 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 UBE2OQ9C0C9 1292 aaKnown RBP16.56■□□□□ 0.24
NPHP4-205ENST00000466897 NAT10Q9H0A0 1025 aaKnown RBP16.56■□□□□ 0.24
NPHP4-205ENST00000466897 PLEKHA5Q9HAU0 1116 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 TOPORSQ9NS56 1045 aaPredicted RBP16.56■□□□□ 0.24
NPHP4-205ENST00000466897 GIT1Q9Y2X7 761 aa16.56■□□□□ 0.24
NPHP4-205ENST00000466897 ITGA4P13612 1032 aa16.55■□□□□ 0.24
NPHP4-205ENST00000466897 NR2F2P24468 414 aa16.55■□□□□ 0.24
NPHP4-205ENST00000466897 ZNF445P59923 1031 aa16.55■□□□□ 0.24
NPHP4-205ENST00000466897 ENPEPQ07075 957 aa16.55■□□□□ 0.24
NPHP4-205ENST00000466897 CRELD2Q6UXH1 353 aaPredicted RBP16.55■□□□□ 0.24
NPHP4-205ENST00000466897 AGMOQ6ZNB7 445 aa16.55■□□□□ 0.24
NPHP4-205ENST00000466897 CEP120Q8N960 986 aa16.55■□□□□ 0.24
NPHP4-205ENST00000466897 CEP63Q96MT8 703 aa16.55■□□□□ 0.24
NPHP4-205ENST00000466897 ACAP3Q96P50 834 aa16.55■□□□□ 0.24
NPHP4-205ENST00000466897 PRO3102Q9H379 93 aa16.55■□□□□ 0.24
NPHP4-205ENST00000466897 CXXC1Q9P0U4 656 aaPredicted RBP16.55■□□□□ 0.24
NPHP4-205ENST00000466897 PCDHB7Q9Y5E2 793 aa16.55■□□□□ 0.24
NPHP4-205ENST00000466897 SLC4A7Q9Y6M7 1214 aa16.55■□□□□ 0.24
NPHP4-205ENST00000466897 KIAA1671Q9BY89 1806 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 TRIM49BA6NDI0 452 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 ZBBXA8MT70 800 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 CETN3O15182 167 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 CLIC2O15247 247 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 SLC16A3O15427 465 aaKnown RBP16.54■□□□□ 0.24
NPHP4-205ENST00000466897 RECQL4O94761 1208 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 HARSP12081 509 aaKnown RBP16.54■□□□□ 0.24
NPHP4-205ENST00000466897 YARSP54577 528 aaKnown RBP16.54■□□□□ 0.24
NPHP4-205ENST00000466897 MCCD1P59942 119 aaPredicted RBP16.54■□□□□ 0.24
NPHP4-205ENST00000466897 DEFB103AP81534 67 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 ADAM9Q13443 819 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 XKR4Q5GH76 650 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 LRRC55Q6ZSA7 311 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 C11orf57Q6ZUT1 292 aaPredicted RBP16.54■□□□□ 0.24
NPHP4-205ENST00000466897 CD302Q8IX05 232 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 THNSL1Q8IYQ7 743 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 ENOX1Q8TC92 643 aaKnown RBP16.54■□□□□ 0.24
NPHP4-205ENST00000466897 MED15Q96RN5 788 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 DUSP9Q99956 384 aaKnown RBP16.54■□□□□ 0.24
NPHP4-205ENST00000466897 ANP32EQ9BTT0 268 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 PCIF1Q9H4Z3 704 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 RSAD1Q9HA92 442 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 SNTG2Q9NY99 539 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 LRFN2Q9ULH4 789 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 HES2Q9Y543 173 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.54■□□□□ 0.24
NPHP4-205ENST00000466897 NLRC5Q86WI3 1866 aa16.54■□□□□ 0.24
NPHP4-205ENST00000466897 ZNF233A6NK53 670 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 RBAK-RBAKDNI3L0D1 243 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 EXOC3O60645 756 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 DGKIO75912 1065 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 FGFR1OPO95684 399 aaKnown RBP16.53■□□□□ 0.24
NPHP4-205ENST00000466897 ACOT2P49753 483 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 CYP2J2P51589 502 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 SHHQ15465 462 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 SNRNP35Q16560 246 aaKnown RBP16.53■□□□□ 0.24
NPHP4-205ENST00000466897 ANO6Q4KMQ2 910 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 ZBTB41Q5SVQ8 909 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 C9orf50Q5SZB4 431 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 LRSAM1Q6UWE0 723 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 GLB1LQ6UWU2 654 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 ALKAL1Q6UXT8 129 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 BRSK2Q8IWQ3 736 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 CSGALNACT2Q8N6G5 542 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 SAAL1Q96ER3 474 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 SNX27Q96L92 541 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 RNPC3Q96LT9 517 aaKnown RBP16.53■□□□□ 0.24
NPHP4-205ENST00000466897 FAM213AQ9BRX8 229 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 DNAJC25Q9H1X3 360 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 ASB7Q9H672 318 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 RPF1Q9H9Y2 349 aaKnown RBP16.53■□□□□ 0.24
NPHP4-205ENST00000466897 RC3H2Q9HBD1 1191 aaKnown RBP16.53■□□□□ 0.24
NPHP4-205ENST00000466897 RNF19AQ9NV58 838 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 CNTN3Q9P232 1028 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 FRMD4BQ9Y2L6 1034 aa16.53■□□□□ 0.24
NPHP4-205ENST00000466897 A0A1W2PPC1 479 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 TTC26A0AVF1 554 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 OFD1O75665 1012 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 IL18RAPO95256 599 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 GJB5O95377 273 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 GNA14O95837 355 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 PSMC2P35998 433 aaKnown RBP16.52■□□□□ 0.24
NPHP4-205ENST00000466897 TNFSF9P41273 254 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 HTRA4P83105 476 aaPredicted RBP16.52■□□□□ 0.24
NPHP4-205ENST00000466897 SURF1Q15526 300 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 ENOX2Q16206 610 aaKnown RBP16.52■□□□□ 0.24
NPHP4-205ENST00000466897 SLC10A6Q3KNW5 377 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 CLLU1OSQ5K130 101 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 SPATA1Q5VX52 437 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 FILIP1Q7Z7B0 1213 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 TMEM192Q8IY95 271 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 NOC3LQ8WTT2 800 aaKnown RBP16.52■□□□□ 0.24
NPHP4-205ENST00000466897 ZNF689Q96CS4 500 aaPredicted RBP16.52■□□□□ 0.24
NPHP4-205ENST00000466897 MFSD14AQ96MC6 490 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 TMEM117Q9H0C3 514 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 RNF39Q9H2S5 420 aa16.52■□□□□ 0.24
NPHP4-205ENST00000466897 RBAKQ9NYW8 714 aaPredicted RBP16.52■□□□□ 0.24
NPHP4-205ENST00000466897 DERAQ9Y315 318 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms