RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 CDK5RAP3Q96JB5 506 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 NECTIN4Q96NY8 510 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 KLHL5Q96PQ7 755 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 NTPCRQ9BSD7 190 aaKnown RBP13.25□□□□□ -0.29
USP40-210ENST00000454354 COLEC11Q9BWP8 271 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 EMILIN2Q9BXX0 1053 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 RXFP1Q9HBX9 757 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 CHST7Q9NS84 486 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 ADAM28Q9UKQ2 775 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 TNFSF13BQ9Y275 285 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 SSX2IPQ9Y2D8 614 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 RBM19Q9Y4C8 960 aaKnown RBP13.25□□□□□ -0.29
USP40-210ENST00000454354 MUC6Q6W4X9 2439 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 DOCK8Q8NF50 2099 aa13.25□□□□□ -0.29
USP40-210ENST00000454354 VPS37CA5D8V6 355 aaPredicted RBP13.24□□□□□ -0.29
USP40-210ENST00000454354 CCDC169A6NNP5 214 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 C1RP00736 705 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 SSBP05455 408 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP40-210ENST00000454354 PLA2G4BP0C869 781 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 PROZP22891 400 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 LONP1P36776 959 aaKnown RBP13.24□□□□□ -0.29
USP40-210ENST00000454354 SF3A1Q15459 793 aaKnown RBP13.24□□□□□ -0.29
USP40-210ENST00000454354 ZRSR1Q15695 479 aaKnown RBP13.24□□□□□ -0.29
USP40-210ENST00000454354 KIAA1841Q6NSI8 718 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 CES5AQ6NT32 575 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 FUT10Q6P4F1 479 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 KCNN1Q92952 543 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 ACO2Q99798 780 aaKnown RBP13.24□□□□□ -0.29
USP40-210ENST00000454354 APOL5Q9BWW9 433 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 MRPL4Q9BYD3 311 aaKnown RBP13.24□□□□□ -0.29
USP40-210ENST00000454354 CXCL16Q9H2A7 254 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 PTPRHQ9HD43 1115 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 KMT5AQ9NQR1 393 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 KCNG1Q9UIX4 513 aa13.24□□□□□ -0.29
USP40-210ENST00000454354 KMT2EQ8IZD2 1858 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 SF3B1O75533 1304 aaKnown RBP eCLIP13.23□□□□□ -0.29
USP40-210ENST00000454354 FAM86C2PA6NEL3 165 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 PRR33A8MZF0 331 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 ABLIM1O14639 778 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 BRD1O95696 1058 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 THP07101 528 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 ADH1AP07327 375 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 PLS3P13797 630 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 SYT1P21579 422 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 UBA7P41226 1012 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 GRM5P41594 1212 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 MTHFRP42898 656 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 RESTQ13127 1097 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 HSP90AA2PQ14568 343 aaPredicted RBP13.23□□□□□ -0.29
USP40-210ENST00000454354 ARSHQ5FYA8 562 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 TMEM161BQ8NDZ6 487 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 LRRC15Q8TF66 581 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 CALML4Q96GE6 196 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 FBXL18Q96ME1 805 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 PPP1R10Q96QC0 940 aaKnown RBP13.23□□□□□ -0.29
USP40-210ENST00000454354 PLIN2Q99541 437 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 GPR62Q9BZJ7 368 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 CDT1Q9H211 546 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 SFXN1Q9H9B4 322 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 BLOC1S4Q9NUP1 217 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 MUTYHQ9UIF7 546 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 DOCK6Q96HP0 2047 aa13.23□□□□□ -0.29
USP40-210ENST00000454354 ZDBF2Q9HCK1 2354 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 K7ELQ4 463 aaPredicted RBP13.22□□□□□ -0.29
USP40-210ENST00000454354 SLC16A4O15374 487 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 TEX28O15482 410 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 PAPLNO95428 1278 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 MAPTP10636 758 aaKnown RBP13.22□□□□□ -0.29
USP40-210ENST00000454354 MCF2P10911 925 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 KLRC2P26717 231 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 NCKAP1LP55160 1127 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 GRIN1Q05586 938 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 RAD51AP2Q09MP3 1159 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 PTPAQ15257 358 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 USP41Q3LFD5 358 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 ZNF568Q3ZCX4 644 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 XKR4Q5GH76 650 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 RARS2Q5T160 578 aaKnown RBP13.22□□□□□ -0.29
USP40-210ENST00000454354 C12orf76Q8N812 135 aaPredicted RBP13.22□□□□□ -0.29
USP40-210ENST00000454354 RPGRIP1Q96KN7 1286 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 RIPOR3Q96MK2 946 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 PAAF1Q9BRP4 392 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 TARS2Q9BW92 718 aaKnown RBP13.22□□□□□ -0.29
USP40-210ENST00000454354 POMKQ9H5K3 350 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.22□□□□□ -0.29
USP40-210ENST00000454354 FNIP2Q9P278 1114 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 CDH22Q9UJ99 828 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 ODF2LQ9ULJ1 636 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 GDAQ9Y2T3 454 aa13.22□□□□□ -0.29
USP40-210ENST00000454354 MORC2Q9Y6X9 1032 aaPredicted RBP13.22□□□□□ -0.29
USP40-210ENST00000454354 CASTOR2A6NHX0 329 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 SFI1A8K8P3 1242 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 TMEM189-UBE2V1I3L0A0 370 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 C2CD2LO14523 706 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 TADA2AO75478 443 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 KIF4AO95239 1232 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 PLCG1P19174 1290 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 SCP2P22307 547 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 ZNF131P52739 623 aa13.21□□□□□ -0.29
USP40-210ENST00000454354 SMTNP53814 917 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms