RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 UBN1Q9NPG3 1134 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 TMEM161AQ9NX61 479 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 LRFN2Q9ULH4 789 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 FRMD4BQ9Y2L6 1034 aa17.2■□□□□ 0.34
USP40-206ENST00000443711 ZNF233A6NK53 670 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 FAM189A1O60320 539 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 IBSPP21815 317 aaPredicted RBP17.19■□□□□ 0.34
USP40-206ENST00000443711 ACOT2P49753 483 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 ZNF165P49910 485 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 YARSP54577 528 aaKnown RBP17.19■□□□□ 0.34
USP40-206ENST00000443711 OSTNP61366 133 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 WDR5P61964 334 aaKnown RBP17.19■□□□□ 0.34
USP40-206ENST00000443711 POU5F1Q01860 360 aaKnown RBP17.19■□□□□ 0.34
USP40-206ENST00000443711 SEZ6Q53EL9 994 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 SPATA1Q5VX52 437 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 CEP135Q66GS9 1140 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.19■□□□□ 0.34
USP40-206ENST00000443711 ZNF598Q86UK7 904 aaKnown RBP17.19■□□□□ 0.34
USP40-206ENST00000443711 NPAS4Q8IUM7 802 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 ZC3H3Q8IXZ2 948 aaKnown RBP17.19■□□□□ 0.34
USP40-206ENST00000443711 CEP120Q8N960 986 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 RNF169Q8NCN4 708 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 FBXL18Q96ME1 805 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 MED15Q96RN5 788 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 APOL6Q9BWW8 343 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 SRRTQ9BXP5 876 aaKnown RBP17.19■□□□□ 0.34
USP40-206ENST00000443711 NXF3Q9H4D5 531 aaKnown RBP17.19■□□□□ 0.34
USP40-206ENST00000443711 RPF1Q9H9Y2 349 aaKnown RBP17.19■□□□□ 0.34
USP40-206ENST00000443711 SNTG2Q9NY99 539 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 PARP2Q9UGN5 583 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 CPSF3Q9UKF6 684 aaKnown RBP17.19■□□□□ 0.34
USP40-206ENST00000443711 HES2Q9Y543 173 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 PCDHB7Q9Y5E2 793 aa17.19■□□□□ 0.34
USP40-206ENST00000443711 ATF7P17544 494 aaPredicted RBP17.18■□□□□ 0.34
USP40-206ENST00000443711 ZBTB41Q5SVQ8 909 aa17.18■□□□□ 0.34
USP40-206ENST00000443711 CRELD2Q6UXH1 353 aaPredicted RBP17.18■□□□□ 0.34
USP40-206ENST00000443711 FILIP1Q7Z7B0 1213 aa17.18■□□□□ 0.34
USP40-206ENST00000443711 RDH13Q8NBN7 331 aa17.18■□□□□ 0.34
USP40-206ENST00000443711 ZSWIM2Q8NEG5 633 aa17.18■□□□□ 0.34
USP40-206ENST00000443711 GDF15Q99988 308 aa17.18■□□□□ 0.34
USP40-206ENST00000443711 UBE2OQ9C0C9 1292 aaKnown RBP17.18■□□□□ 0.34
USP40-206ENST00000443711 RNF39Q9H2S5 420 aa17.18■□□□□ 0.34
USP40-206ENST00000443711 TOPORSQ9NS56 1045 aaPredicted RBP17.18■□□□□ 0.34
USP40-206ENST00000443711 GIT1Q9Y2X7 761 aa17.18■□□□□ 0.34
USP40-206ENST00000443711 TRIP11Q15643 1979 aa17.18■□□□□ 0.34
USP40-206ENST00000443711 SMTNL1A8MU46 457 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 MAPK13O15264 365 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 HOXA2O43364 376 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 AKAP5P24588 427 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 PSMC2P35998 433 aaKnown RBP17.17■□□□□ 0.34
USP40-206ENST00000443711 TNFSF9P41273 254 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 CASP4P49662 377 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 MYL5Q02045 173 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 SNRNP35Q16560 246 aaKnown RBP17.17■□□□□ 0.34
USP40-206ENST00000443711 LRRC55Q6ZSA7 311 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 CBWD2Q8IUF1 395 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 TMEM192Q8IY95 271 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 LPPQ93052 612 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 TOP1MTQ969P6 601 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 MKNK1Q9BUB5 465 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 PLEKHA5Q9HAU0 1116 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 SLC4A7Q9Y6M7 1214 aa17.17■□□□□ 0.34
USP40-206ENST00000443711 IKBKBO14920 756 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 SLC16A3O15427 465 aaKnown RBP17.16■□□□□ 0.34
USP40-206ENST00000443711 AKAP3O75969 853 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 RECQL4O94761 1208 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 IL18RAPO95256 599 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 GNA14O95837 355 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 EPB41P11171 864 aaKnown RBP17.16■□□□□ 0.34
USP40-206ENST00000443711 DEFB103AP81534 67 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 SURF1Q15526 300 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 ENOX2Q16206 610 aaKnown RBP17.16■□□□□ 0.34
USP40-206ENST00000443711 AGMOQ6ZNB7 445 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 BRSK2Q8IWQ3 736 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 CD302Q8IX05 232 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 FAM186BQ8IYM0 893 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 CRIPAKQ8N1N5 446 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 AOPEPQ8N6M6 819 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 EEF2KMTQ96G04 330 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 THAP9Q9H5L6 903 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 RSAD1Q9HA92 442 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 RBAKQ9NYW8 714 aaPredicted RBP17.16■□□□□ 0.34
USP40-206ENST00000443711 NFE2L3Q9Y4A8 694 aa17.16■□□□□ 0.34
USP40-206ENST00000443711 BECN2A8MW95 431 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 UPP2O95045 317 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 ADRB2P07550 413 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 CXCL8P10145 99 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 PPP2R3AQ06190 1150 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 CYP24A1Q07973 514 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 SLC10A6Q3KNW5 377 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 RASIP1Q5U651 963 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 GLB1LQ6UWU2 654 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 FAM114A1Q8IWE2 563 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 PHOSPHO2Q8TCD6 241 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 FAM200AQ8TCP9 573 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 RSPH1Q8WYR4 309 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 FAM212AQ96EL1 285 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 SNX27Q96L92 541 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 MFSD14AQ96MC6 490 aa17.15■□□□□ 0.34
USP40-206ENST00000443711 SLC9A7Q96T83 725 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms