RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 TMEM253P0C7T8 217 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 DYNLT1P63172 113 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 SKOR1P84550 965 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 SNCBQ16143 134 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 HHIPL2Q6UWX4 724 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 OTOP1Q7RTM1 612 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 RHOT2Q8IXI1 618 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 SPIRE2Q8WWL2 714 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 CHMP6Q96FZ7 201 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 C11orf70Q9BRQ4 267 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 FAM117AQ9C073 453 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 NKIRAS1Q9NYS0 192 aa8.63□□□□□ -1.03
HPS4-205ENST00000429411 KIAA0100Q14667 2235 aaKnown RBP8.62□□□□□ -1.03
HPS4-205ENST00000429411 TCRBV7S2A1N4TA0A589 114 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 DENND3A2RUS2 1198 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 GOLGA8SH3BPF8 625 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 GOLGA8MH3BSY2 632 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 RBAK-RBAKDNI3L0D1 243 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 SHOX2O60902 331 aaPredicted RBP8.62□□□□□ -1.03
HPS4-205ENST00000429411 PYGMP11217 842 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 CETN2P41208 172 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 MFAP3P55082 362 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 JAG1P78504 1218 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 PPP3CAQ08209 521 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 TRAF1Q13077 416 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 MTMR1Q13613 665 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 TMED2Q15363 201 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 KYNUQ16719 465 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 COBLL1Q53SF7 1204 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 WDR44Q5JSH3 913 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 ARHGEF16Q5VV41 709 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 INTS8Q75QN2 995 aaKnown RBP8.62□□□□□ -1.03
HPS4-205ENST00000429411 TAOK1Q7L7X3 1001 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 CDAN1Q8IWY9 1227 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 LRRC34Q8IZ02 419 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 KIF2BQ8N4N8 673 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 SCFD2Q8WU76 684 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 XPO6Q96QU8 1125 aaKnown RBP8.62□□□□□ -1.03
HPS4-205ENST00000429411 KDM4CQ9H3R0 1056 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 VPS37BQ9H9H4 285 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 LRRC4CQ9HCJ2 640 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 SLC40A1Q9NP59 571 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 KMT5AQ9NQR1 393 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 LRP5O75197 1615 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 WDR91A4D1P6 747 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 LRRIQ4A6NIV6 560 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 NFIBO00712 420 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 SLC16A3O15427 465 aaKnown RBP8.62□□□□□ -1.03
HPS4-205ENST00000429411 GAS8O95995 478 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 ATF2P15336 505 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 CD58P19256 250 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 HUNKP57058 714 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 RWDD2BP57060 319 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 DMP1Q13316 513 aaPredicted RBP8.62□□□□□ -1.03
HPS4-205ENST00000429411 SEZ6Q53EL9 994 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 SYCP2LQ5T4T6 812 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 SH3BP5LQ7L8J4 393 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 PRUNE1Q86TP1 453 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 GPC2Q8N158 579 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 ARHGEF2Q92974 986 aaKnown RBP8.62□□□□□ -1.03
HPS4-205ENST00000429411 ACSF2Q96CM8 615 aaPredicted RBP8.62□□□□□ -1.03
HPS4-205ENST00000429411 KCNH7Q9NS40 1196 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 C1orf112Q9NSG2 853 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 SEPT9Q9UHD8 586 aaPredicted RBP8.62□□□□□ -1.03
HPS4-205ENST00000429411 ZNF148Q9UQR1 794 aa8.62□□□□□ -1.03
HPS4-205ENST00000429411 OPLAHO14841 1288 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 TBX3O15119 743 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 NSFP46459 744 aaKnown RBP8.61□□□□□ -1.03
HPS4-205ENST00000429411 RPL21P46778 160 aaKnown RBP8.61□□□□□ -1.03
HPS4-205ENST00000429411 KRT17Q04695 432 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 MAPK7Q13164 816 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 MTERF2Q49AM1 385 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 NLRX1Q86UT6 975 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 SPATS2Q86XZ4 545 aaKnown RBP8.61□□□□□ -1.03
HPS4-205ENST00000429411 LRRC57Q8N9N7 239 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 RUBCNQ92622 972 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 BEGAINQ9BUH8 593 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 DDX23Q9BUQ8 820 aaKnown RBP8.61□□□□□ -1.03
HPS4-205ENST00000429411 STMN4Q9H169 189 aaPredicted RBP8.61□□□□□ -1.03
HPS4-205ENST00000429411 HOMER3Q9NSC5 361 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 CTNNAL1Q9UBT7 734 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 COG5Q9UP83 839 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 TRPC6Q9Y210 931 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.61□□□□□ -1.03
HPS4-205ENST00000429411 SYNGAP1Q96PV0 1343 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 ANKRD36CQ5JPF3 1778 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 CCDC189A1A4V9 331 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 TCP11X1B4DZS4 312 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 SPAG7O75391 227 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 CLNS1AP54105 237 aaKnown RBP8.61□□□□□ -1.03
HPS4-205ENST00000429411 DCUN1D2Q6PH85 259 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 VSIG1Q86XK7 387 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 CCDC77Q9BR77 488 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 FGFR1OP2Q9NVK5 253 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 GPRC5DQ9NZD1 345 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 WRAP73Q9P2S5 460 aaPredicted RBP8.61□□□□□ -1.03
HPS4-205ENST00000429411 ANAPC5Q9UJX4 755 aa8.61□□□□□ -1.03
HPS4-205ENST00000429411 TPX2Q9ULW0 747 aaKnown RBP8.61□□□□□ -1.03
HPS4-205ENST00000429411 G3BP2Q9UN86 482 aaKnown RBP8.61□□□□□ -1.03
HPS4-205ENST00000429411 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms