RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, human

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13A-208	ENST00000423463	PLBD2	Q8NHP8	589 aa		3.13	□□□□□ -1.91
VPS13A-208	ENST00000423463	TSR2	Q969E8	191 aa	Known RBP	3.13	□□□□□ -1.91
VPS13A-208	ENST00000423463	STK31	Q9BXU1	1019 aa		3.13	□□□□□ -1.91
VPS13A-208	ENST00000423463	OR10A5	Q9H207	317 aa		3.13	□□□□□ -1.91
VPS13A-208	ENST00000423463	SEMA4A	Q9H3S1	761 aa		3.13	□□□□□ -1.91
VPS13A-208	ENST00000423463	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	3.13	□□□□□ -1.91
VPS13A-208	ENST00000423463	INVS	Q9Y283	1065 aa		3.13	□□□□□ -1.91
VPS13A-208	ENST00000423463	PRL	P01236	227 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	HMGCR	P04035	888 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	ANXA1	P04083	346 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	SDHA	P31040	664 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	ECE1	P42892	770 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	SLC6A3	Q01959	620 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	EXOSC9	Q06265	439 aa	Known RBP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	SLFN5	Q08AF3	891 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	NFATC3	Q12968	1075 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	TCIRG1	Q13488	830 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	SART3	Q15020	963 aa	Known RBP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	HLF	Q16534	295 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	PROSER3	Q2NL68	480 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	PARP10	Q53GL7	1025 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	UBXN11	Q5T124	520 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	CC2D1A	Q6P1N0	951 aa	Predicted RBP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	LILRA6	Q6PI73	481 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	UNQ6494/PRO21346	Q6UXR6	183 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	STRA8	Q7Z7C7	330 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	ZNF34	Q8IZ26	560 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	BRIP1	Q9BX63	1249 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	FAM126A	Q9BYI3	521 aa	Predicted RBP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	BRINP2	Q9C0B6	783 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	BARX1	Q9HBU1	254 aa	Predicted RBP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	CHPF2	Q9P2E5	772 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	NIP7	Q9Y221	180 aa	Known RBP eCLIP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	ASB1	Q9Y576	335 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	FANCI	Q9NVI1	1328 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	COL24A1	Q17RW2	1714 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	EP400	Q96L91	3159 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	KDM3B	Q7LBC6	1761 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	VIRMA	Q69YN4	1812 aa	Known RBP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	DDX58	O95786	925 aa	Known RBP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	DPEP1	P16444	411 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	ALDH6A1	Q02252	535 aa	Known RBP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	AIMP1	Q12904	312 aa	Known RBP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	NOLC1	Q14978	699 aa	Known RBP eCLIP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	GPR162	Q16538	588 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	PRR5L	Q6MZQ0	368 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	PPP1R42	Q7Z4L9	355 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	FRMD5	Q7Z6J6	570 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	FAM124A	Q86V42	546 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	NBPF5P	Q86XG9	351 aa	Predicted RBP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	TRMT2A	Q8IZ69	625 aa	Known RBP	3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	C16orf92	Q96LL3	132 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	NYX	Q9GZU5	481 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	RTEL1	Q9NZ71	1219 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	SPO11	Q9Y5K1	396 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	TUBGCP6	Q96RT7	1819 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463	CARMIL3	Q8ND23	1372 aa		3.12	□□□□□ -1.91
VPS13A-208	ENST00000423463		A0A0G2JLW4	131 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	UBA6	A0AVT1	1052 aa	Predicted RBP	3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	KLRG2	A4D1S0	409 aa	Predicted RBP	3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463		H0YIN7	160 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	NPHP1	O15259	732 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	TGM5	O43548	720 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	FKBP9	O95302	570 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	CT47B1	P0C2W7	299 aa	Predicted RBP	3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	SCNN1B	P51168	640 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	KPNA1	P52294	538 aa	Predicted RBP	3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	SLC10A5	Q5PT55	438 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	KSR2	Q6VAB6	950 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463		Q6ZUG5	572 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	LARP4	Q71RC2	724 aa	Known RBP eCLIP	3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	FKBP9P1	Q75LS8	142 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	CNBD1	Q8NA66	436 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	TUBGCP5	Q96RT8	1024 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	ISCA1	Q9BUE6	129 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	BTBD2	Q9BX70	525 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	KATNBL1	Q9H079	304 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	ZMAT4	Q9H898	229 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	FAM184B	Q9ULE4	1060 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	RNF123	Q5XPI4	1314 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	C10orf71	Q711Q0	1435 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	ATP10D	Q9P241	1426 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	C9orf118	A6NHY6	69 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	NEMP1	O14524	444 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	DNAJC6	O75061	913 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	VIL1	P09327	827 aa	Known RBP	3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	KCNA3	P22001	575 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	GPT	P24298	496 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	STAT3	P40763	770 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	MASP1	P48740	699 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	TOP3A	Q13472	1001 aa	Predicted RBP	3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	MOGS	Q13724	837 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	MYBPC3	Q14896	1274 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	SUSD4	Q5VX71	490 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	SLFN12L	Q6IEE8	588 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	BORA	Q6PGQ7	559 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	LIMS2	Q7Z4I7	341 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	RALYL	Q86SE5	291 aa	Known RBP	3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	C2CD5	Q86YS7	1000 aa		3.11	□□□□□ -1.91
VPS13A-208	ENST00000423463	C7orf31	Q8N865	590 aa		3.11	□□□□□ -1.91

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