RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 ANO3Q9BYT9 981 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 ANAPC5Q9UJX4 755 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 SCN7AQ01118 1682 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 GTPBP10A4D1E9 387 aaKnown RBP16.95■□□□□ 0.3
CKAP4-201ENST00000378026 ANKRD33BA6NCL7 494 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 POC1B-GALNT4F8VUJ3 575 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 IRF6O14896 467 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 T-ENOLP0DO92 83 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 SP100P23497 879 aaPredicted RBP16.95■□□□□ 0.3
CKAP4-201ENST00000378026 RPS6KA3P51812 740 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 DTX3LQ8TDB6 740 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 ELMO3Q96BJ8 720 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 SLC7A6OSQ96CW6 309 aaPredicted RBP16.95■□□□□ 0.3
CKAP4-201ENST00000378026 NUP85Q9BW27 656 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 MYO3BQ8WXR4 1341 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 CHMP2AO43633 222 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 LDHCP07864 332 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 RCN2Q14257 317 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 PARP6Q2NL67 630 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 KHDC1Q4VXA5 237 aaKnown RBP16.95■□□□□ 0.3
CKAP4-201ENST00000378026 TAF1BQ53T94 588 aaPredicted RBP16.95■□□□□ 0.3
CKAP4-201ENST00000378026 C11orf63Q6NUN7 778 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 ARHGEF19Q8IW93 802 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 PHC3Q8NDX5 983 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 ERMNQ8TAM6 284 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 PCDHB18PQ96TA0 734 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 PCIF1Q9H4Z3 704 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 FRMD4BQ9Y2L6 1034 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 USH1CQ9Y6N9 552 aa16.95■□□□□ 0.3
CKAP4-201ENST00000378026 SGPL1O95470 568 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 ZNF564Q8TBZ8 553 aaPredicted RBP16.94■□□□□ 0.3
CKAP4-201ENST00000378026 HEMGNQ9BXL5 484 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 NMRK1Q9NWW6 199 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 RABGAP1Q9Y3P9 1069 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 PCDHA1Q9Y5I3 950 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 WDR91A4D1P6 747 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 FAM196BA6NMK8 535 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 EXOC3O60645 756 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 DLG4P78352 724 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 ZNF543Q08ER8 600 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 PPP1R21Q6ZMI0 780 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 CYP2W1Q8TAV3 490 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 LRRC8CQ8TDW0 803 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 ATP8B3O60423 1300 aa16.94■□□□□ 0.3
CKAP4-201ENST00000378026 ATAD5Q96QE3 1844 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 FAM47DPA6NHR8 397 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 ZBTB5O15062 677 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 PPP4CP60510 307 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 ROR2Q01974 943 aaKnown RBP16.93■□□□□ 0.3
CKAP4-201ENST00000378026 DAB2IPQ5VWQ8 1189 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 RFX8Q6ZV50 586 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 ZC3H18Q86VM9 953 aaKnown RBP16.93■□□□□ 0.3
CKAP4-201ENST00000378026 SNF8Q96H20 258 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 TRIM4Q9C037 500 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 WNT8AQ9H1J5 351 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 DCTN4Q9UJW0 460 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 NVLO15381 856 aaKnown RBP16.93■□□□□ 0.3
CKAP4-201ENST00000378026 ATF2P15336 505 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 RPA1P27694 616 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 ZNF568Q3ZCX4 644 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 TMEM63BQ5T3F8 832 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 TPH2Q8IWU9 490 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.93■□□□□ 0.3
CKAP4-201ENST00000378026 ZNF653Q96CK0 615 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 GRAMD1AQ96CP6 724 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.93■□□□□ 0.3
CKAP4-201ENST00000378026 CDH16O75309 829 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 GGPS1O95749 300 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 ALDH3A1P30838 453 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 SPIRE1Q08AE8 756 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 ACVR2BQ13705 512 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 NBPF5PQ86XG9 351 aaPredicted RBP16.93■□□□□ 0.3
CKAP4-201ENST00000378026 MFN1Q8IWA4 741 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 WHRNQ9P202 907 aa16.93■□□□□ 0.3
CKAP4-201ENST00000378026 ZMYM2Q9UBW7 1377 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 KRT15P19012 456 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 ITIH2P19823 946 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 GCLMP48507 274 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 CCDC15Q0P6D6 951 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 CYP1B1Q16678 543 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 HS2ST1Q7LGA3 356 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 SLFN12Q8IYM2 578 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 SYCP3Q8IZU3 236 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 ANKRD35Q8N283 1001 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 RBBP8NLQ8NC74 664 aaPredicted RBP16.92■□□□□ 0.3
CKAP4-201ENST00000378026 P2RX7Q99572 595 aaKnown RBP16.92■□□□□ 0.3
CKAP4-201ENST00000378026 NPHS2Q9NP85 383 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 UBN1Q9NPG3 1134 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 TISP43B9A030 160 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 ATP5HO75947 161 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 BCRP11274 1271 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 YARSP54577 528 aaKnown RBP16.92■□□□□ 0.3
CKAP4-201ENST00000378026 ARHGAP4P98171 946 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 KIF22Q14807 665 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 FRMPD4Q14CM0 1322 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 RCN1Q15293 331 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 USH1GQ495M9 461 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 RINT1Q6NUQ1 792 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 DSTYKQ6XUX3 929 aa16.92■□□□□ 0.3
CKAP4-201ENST00000378026 MTDHQ86UE4 582 aaKnown RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms