RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 FBXO2Q9UK22 296 aaPredicted RBP18.48■□□□□ 0.55
HMGN4-201ENST00000377575 SSX2IPQ9Y2D8 614 aa18.48■□□□□ 0.55
HMGN4-201ENST00000377575 SRPRBQ9Y5M8 271 aaKnown RBP18.48■□□□□ 0.55
HMGN4-201ENST00000377575 HCFC2Q9Y5Z7 792 aa18.48■□□□□ 0.55
HMGN4-201ENST00000377575 MORC2Q9Y6X9 1032 aaPredicted RBP18.48■□□□□ 0.55
HMGN4-201ENST00000377575 SFI1A8K8P3 1242 aa18.47■□□□□ 0.55
HMGN4-201ENST00000377575 KRT18P05783 430 aaKnown RBP18.47■□□□□ 0.55
HMGN4-201ENST00000377575 THP07101 528 aa18.47■□□□□ 0.55
HMGN4-201ENST00000377575 HOXB8P17481 243 aaPredicted RBP18.47■□□□□ 0.55
HMGN4-201ENST00000377575 CEBPZQ03701 1054 aaKnown RBP18.47■□□□□ 0.55
HMGN4-201ENST00000377575 TUSC3Q13454 348 aa18.47■□□□□ 0.55
HMGN4-201ENST00000377575 TAS1R3Q7RTX0 852 aa18.47■□□□□ 0.55
HMGN4-201ENST00000377575 PPFIBP1Q86W92 1011 aa18.47■□□□□ 0.55
HMGN4-201ENST00000377575 LARP4BQ92615 738 aaKnown RBP18.47■□□□□ 0.55
HMGN4-201ENST00000377575 NTPCRQ9BSD7 190 aaKnown RBP18.47■□□□□ 0.55
HMGN4-201ENST00000377575 EMILIN2Q9BXX0 1053 aa18.47■□□□□ 0.55
HMGN4-201ENST00000377575 MRPL17Q9NRX2 175 aaKnown RBP18.47■□□□□ 0.55
HMGN4-201ENST00000377575 BLOC1S4Q9NUP1 217 aa18.47■□□□□ 0.55
HMGN4-201ENST00000377575 GDAQ9Y2T3 454 aa18.47■□□□□ 0.55
HMGN4-201ENST00000377575 USP15Q9Y4E8 981 aaPredicted RBP18.47■□□□□ 0.55
HMGN4-201ENST00000377575 PDCD11Q14690 1871 aaKnown RBP18.47■□□□□ 0.55
HMGN4-201ENST00000377575 NPHP3-ACAD11A0A0J9YXS1 232 aa18.46■□□□□ 0.55
HMGN4-201ENST00000377575 FAM13AO94988 1023 aa18.46■□□□□ 0.55
HMGN4-201ENST00000377575 SCP2P22307 547 aa18.46■□□□□ 0.55
HMGN4-201ENST00000377575 YARSP54577 528 aaKnown RBP18.46■□□□□ 0.55
HMGN4-201ENST00000377575 DHX8Q14562 1220 aaKnown RBP18.46■□□□□ 0.55
HMGN4-201ENST00000377575 TPRNQ4KMQ1 711 aa18.46■□□□□ 0.55
HMGN4-201ENST00000377575 ARSHQ5FYA8 562 aa18.46■□□□□ 0.55
HMGN4-201ENST00000377575 TMEM161BQ8NDZ6 487 aa18.46■□□□□ 0.55
HMGN4-201ENST00000377575 USP28Q96RU2 1077 aa18.46■□□□□ 0.55
HMGN4-201ENST00000377575 REEP2Q9BRK0 252 aa18.46■□□□□ 0.55
HMGN4-201ENST00000377575 CCDC94Q9BW85 323 aaPredicted RBP18.46■□□□□ 0.55
HMGN4-201ENST00000377575 CDT1Q9H211 546 aa18.46■□□□□ 0.55
HMGN4-201ENST00000377575 TOPORSQ9NS56 1045 aaPredicted RBP18.46■□□□□ 0.55
HMGN4-201ENST00000377575 DZANK1Q9NVP4 752 aa18.46■□□□□ 0.55
HMGN4-201ENST00000377575 STK17AQ9UEE5 414 aa18.46■□□□□ 0.55
HMGN4-201ENST00000377575 PTGESO14684 152 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 TBCAO75347 108 aaKnown RBP18.45■□□□□ 0.54
HMGN4-201ENST00000377575 MAPTP10636 758 aaKnown RBP18.45■□□□□ 0.54
HMGN4-201ENST00000377575 MCF2P10911 925 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 GRM5P41594 1212 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 GLUD2P49448 558 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 MCM6Q14566 821 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 HSP90AA2PQ14568 343 aaPredicted RBP18.45■□□□□ 0.54
HMGN4-201ENST00000377575 SPECC1Q5M775 1068 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 MPZL3Q6UWV2 235 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 RNF168Q8IYW5 571 aaPredicted RBP18.45■□□□□ 0.54
HMGN4-201ENST00000377575 KRI1Q8N9T8 703 aaKnown RBP18.45■□□□□ 0.54
HMGN4-201ENST00000377575 EPSTI1Q96J88 318 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 TCHPQ9BT92 498 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 TARS2Q9BW92 718 aaKnown RBP18.45■□□□□ 0.54
HMGN4-201ENST00000377575 PARVGQ9HBI0 331 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 PTPRHQ9HD43 1115 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 CD320Q9NPF0 282 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 ADAM28Q9UKQ2 775 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 PLXNA3P51805 1871 aa18.45■□□□□ 0.54
HMGN4-201ENST00000377575 CASTOR2A6NHX0 329 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 C19orf67A6NJJ6 358 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 TOM1L1O75674 476 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 PROZP22891 400 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 NASPP49321 788 aaPredicted RBP18.44■□□□□ 0.54
HMGN4-201ENST00000377575 NCKAP1LP55160 1127 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 NOLC1Q14978 699 aaKnown RBP eCLIP18.44■□□□□ 0.54
HMGN4-201ENST00000377575 SLC39A14Q15043 492 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 STK38Q15208 465 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 KIAA1841Q6NSI8 718 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 FUT10Q6P4F1 479 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 LRRC15Q8TF66 581 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 SUSD6Q92537 303 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 ZNF396Q96N95 335 aaPredicted RBP18.44■□□□□ 0.54
HMGN4-201ENST00000377575 ANKFY1Q9P2R3 1169 aa18.44■□□□□ 0.54
HMGN4-201ENST00000377575 SF3B1O75533 1304 aaKnown RBP eCLIP18.44■□□□□ 0.542e-6■■■■■ 43.1
HMGN4-201ENST00000377575 F8W810 466 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 K7ENM7 598 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 C2CD2LO14523 706 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 TADA2AO75478 443 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 BRD1O95696 1058 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 EFEMP2O95967 443 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 KLRC2P26717 231 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 ABCD1P33897 745 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 DDIT3P35638 169 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 ZNF131P52739 623 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 DSG1Q02413 1049 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 ITIH3Q06033 890 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 CES5AQ6NT32 575 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 SYCE2Q6PIF2 218 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 ZPBP2Q6X784 338 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 ZBTB33Q86T24 672 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 MYCT1Q8N699 235 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 KCNN1Q92952 543 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 BICD1Q96G01 975 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 CLIC6Q96NY7 704 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 KLHL5Q96PQ7 755 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 C1QTNF1Q9BXJ1 281 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 S1PR5Q9H228 398 aa18.43■□□□□ 0.54
HMGN4-201ENST00000377575 SPDYE4A6NLX3 237 aa18.42■□□□□ 0.54
HMGN4-201ENST00000377575 LILRB3O75022 631 aa18.42■□□□□ 0.54
HMGN4-201ENST00000377575 ADH1AP07327 375 aa18.42■□□□□ 0.54
HMGN4-201ENST00000377575 CNPP09543 421 aaKnown RBP18.42■□□□□ 0.54
HMGN4-201ENST00000377575 HARSP12081 509 aaKnown RBP18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms