RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 LSG1Q9H089 658 aaKnown RBP12.49□□□□□ -0.41
RTN3-204ENST00000354497 ZMYND12Q9H0C1 365 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 IFT122Q9HBG6 1241 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 FAM217BQ9NTX9 383 aaPredicted RBP12.49□□□□□ -0.41
RTN3-204ENST00000354497 HES2Q9Y543 173 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 IPPQ9Y573 584 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 PATJQ8NI35 1801 aa12.49□□□□□ -0.41
RTN3-204ENST00000354497 ESYT2A0FGR8 921 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 ERLIN2O94905 339 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 TGM1P22735 817 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 DMWDQ09019 674 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 RSPO2Q6UXX9 243 aaPredicted RBP12.48□□□□□ -0.41
RTN3-204ENST00000354497 SRGAP1Q7Z6B7 1085 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 ITFG1Q8TB96 612 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 SLC7A3Q8WY07 619 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 ING5Q8WYH8 240 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 TMEM143Q96AN5 459 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 CEP89Q96ST8 783 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 EIF2AQ9BY44 585 aaKnown RBP12.48□□□□□ -0.41
RTN3-204ENST00000354497 GPR62Q9BZJ7 368 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 MINDY3Q9H8M7 445 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 CHST7Q9NS84 486 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 MIOSQ9NXC5 875 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 FNIP2Q9P278 1114 aa12.48□□□□□ -0.41
RTN3-204ENST00000354497 NDRG2Q9UN36 371 aaKnown RBP12.48□□□□□ -0.41
RTN3-204ENST00000354497 MYH15Q9Y2K3 1946 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 SLC30A4O14863 429 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 XYLBO75191 536 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 TADA2AO75478 443 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 STBD1O95210 358 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 C8AP07357 584 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 HOXA11P31270 313 aaPredicted RBP12.47□□□□□ -0.41
RTN3-204ENST00000354497 ADD1P35611 737 aaKnown RBP12.47□□□□□ -0.41
RTN3-204ENST00000354497 NPEPPSP55786 919 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 MTAPQ13126 283 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 LILRA6Q6PI73 481 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 ZNF852Q6ZMS4 543 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 CEP57Q86XR8 500 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 RDM1Q8NG50 284 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 BICD2Q8TD16 824 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 HASPINQ8TF76 798 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 PRPF31Q8WWY3 499 aaKnown RBP12.47□□□□□ -0.41
RTN3-204ENST00000354497 PSPC1Q8WXF1 523 aaKnown RBP12.47□□□□□ -0.41
RTN3-204ENST00000354497 CPB2Q96IY4 423 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 TRIM6Q9C030 488 aaPredicted RBP12.47□□□□□ -0.41
RTN3-204ENST00000354497 ANO2Q9NQ90 1003 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 PRMT8Q9NR22 394 aaPredicted RBP12.47□□□□□ -0.41
RTN3-204ENST00000354497 FBXW11Q9UKB1 542 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 ADAM28Q9UKQ2 775 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 MRPS17Q9Y2R5 130 aaKnown RBP12.47□□□□□ -0.41
RTN3-204ENST00000354497 ACACBO00763 2458 aa12.47□□□□□ -0.41
RTN3-204ENST00000354497 GPR179Q6PRD1 2367 aa12.46□□□□□ -0.41
RTN3-204ENST00000354497 HNRNPA1P09651 372 aaKnown RBP eCLIP12.46□□□□□ -0.41
RTN3-204ENST00000354497 AKAP17AQ02040 695 aaKnown RBP12.46□□□□□ -0.41
RTN3-204ENST00000354497 DSC1Q08554 894 aa12.46□□□□□ -0.41
RTN3-204ENST00000354497 LAMTOR4Q0VGL1 99 aa12.46□□□□□ -0.41
RTN3-204ENST00000354497 LAIR1Q6GTX8 287 aa12.46□□□□□ -0.41
RTN3-204ENST00000354497 ANO5Q75V66 913 aa12.46□□□□□ -0.41
RTN3-204ENST00000354497 TRIM44Q96DX7 344 aaPredicted RBP12.46□□□□□ -0.41
RTN3-204ENST00000354497 CEP170P1Q96L14 293 aa12.46□□□□□ -0.41
RTN3-204ENST00000354497 NELL2Q99435 816 aa12.46□□□□□ -0.41
RTN3-204ENST00000354497 HEBP1Q9NRV9 189 aa12.46□□□□□ -0.41
RTN3-204ENST00000354497 HCFC1R1Q9NWW0 138 aa12.46□□□□□ -0.41
RTN3-204ENST00000354497 CACNG4Q9UBN1 327 aa12.46□□□□□ -0.41
RTN3-204ENST00000354497 DOCK8Q8NF50 2099 aa12.46□□□□□ -0.42
RTN3-204ENST00000354497 PSMD10O75832 226 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 PAPLNO95428 1278 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 EFEMP2O95967 443 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 C1RP00736 705 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 AKAP5P24588 427 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 NRLP54845 237 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 PSMC5P62195 406 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 NCBP1Q09161 790 aaKnown RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 PPP2R5DQ14738 602 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 RTP2Q5QGT7 225 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 NOTUMQ6P988 496 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 HACE1Q8IYU2 909 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 RNF149Q8NC42 400 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 CCDC148Q8NFR7 591 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 SLC7A14Q8TBB6 771 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 NELL1Q92832 810 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 CLDN23Q96B33 292 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 MCRS1Q96EZ8 462 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 MBOAT7Q96N66 472 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 MFRPQ9BY79 579 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 FAM126AQ9BYI3 521 aaPredicted RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 SLKQ9H2G2 1235 aaPredicted RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 KLK14Q9P0G3 267 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 ANGPTL2Q9UKU9 493 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 CACNA1IQ9P0X4 2223 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 TPRP12270 2363 aaKnown RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 SF3B1O75533 1304 aaKnown RBP eCLIP12.45□□□□□ -0.426e-9■■■■■ 64.2
RTN3-204ENST00000354497 TSPAN1O60635 241 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 TDP2O95551 362 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 RPS9P46781 194 aaKnown RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 ADCY1Q08828 1119 aa12.45□□□□□ -0.42
RTN3-204ENST00000354497 COL9A2Q14055 689 aaPredicted RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 SIM2Q14190 667 aaPredicted RBP12.45□□□□□ -0.42
RTN3-204ENST00000354497 NECTIN1Q15223 517 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms