RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 CCDC160A6NGH7 325 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 E9PBE3 544 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 TTI1O43156 1089 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 CAMTA2O94983 1202 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 PGM3O95394 542 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 CREB1P16220 341 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 S100A1P23297 94 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 NPY5RQ15761 445 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 OTUD6AQ7L8S5 288 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 NUP93Q8N1F7 819 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 BBS5Q8N3I7 341 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 CRAMP1Q96RY5 1269 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 MKS1Q9NXB0 559 aa12.63□□□□□ -0.39
SHMT2-201ENST00000328923 TTLL13PA6NNM8 815 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 DGKIO75912 1065 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 NUDT17P0C025 328 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 RASSF2P50749 326 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 COG7P83436 770 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 SEC23AQ15436 765 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 METTL24Q5JXM2 366 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 SUSD4Q5VX71 490 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 DENND2CQ68D51 928 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 KLHDC10Q6PID8 442 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 CCDC174Q6PII3 467 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 COL23A1Q86Y22 540 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-201ENST00000328923 CCDC82Q8N4S0 544 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 HPS3Q969F9 1004 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 TGS1Q96RS0 853 aaKnown RBP12.62□□□□□ -0.39
SHMT2-201ENST00000328923 FMO2Q99518 471 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 ZMYND12Q9H0C1 365 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 MAGEF1Q9HAY2 307 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 DISC1Q9NRI5 854 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 STX18Q9P2W9 335 aaKnown RBP12.62□□□□□ -0.39
SHMT2-201ENST00000328923 RPL26L1Q9UNX3 145 aaKnown RBP12.62□□□□□ -0.39
SHMT2-201ENST00000328923 HBS1LQ9Y450 684 aaKnown RBP12.62□□□□□ -0.39
SHMT2-201ENST00000328923 MYH4Q9Y623 1939 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 GSG1L2A8MUP6 293 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 KCNK3O14649 394 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 KLRC4O43908 158 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 GH1P01241 217 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 CCNE1P24864 410 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 PCSK6P29122 969 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 POLGP54098 1239 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-201ENST00000328923 PFKPQ01813 784 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 DSG1Q02413 1049 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 MAP3K10Q02779 954 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 ITGA9Q13797 1035 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 SEPT7Q16181 437 aaKnown RBP12.62□□□□□ -0.39
SHMT2-201ENST00000328923 FXNQ16595 210 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 PTPROQ16827 1216 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 MIIPQ5JXC2 388 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 MEI1Q5TIA1 1274 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 BPHLQ86WA6 291 aaPredicted RBP12.62□□□□□ -0.39
SHMT2-201ENST00000328923 CMTR1Q8N1G2 835 aaKnown RBP12.62□□□□□ -0.39
SHMT2-201ENST00000328923 CSGALNACT2Q8N6G5 542 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 SCFD2Q8WU76 684 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 CUEDC2Q9H467 287 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 NRDE2Q9H7Z3 1164 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 DKK3Q9UBP4 350 aa12.62□□□□□ -0.39
SHMT2-201ENST00000328923 ABCB11O95342 1321 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 TMEM120BA0PK00 339 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 MATN2O00339 956 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 ITGA4P13612 1032 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 PTK7Q13308 1070 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 SLC29A2Q14542 456 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 COBLL1Q53SF7 1204 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 DEPDC1Q5TB30 811 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 CABP7Q86V35 215 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 NELFCDQ8IXH7 590 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 SIX5Q8N196 739 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 ARHGAP24Q8N264 748 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 VGLL2Q8N8G2 317 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.61□□□□□ -0.394e-7■■□□□ 12.9
SHMT2-201ENST00000328923 CFAP61Q8NHU2 1237 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 CNOT6LQ96LI5 555 aaKnown RBP12.61□□□□□ -0.39
SHMT2-201ENST00000328923 LRRC37BQ96QE4 947 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 ECSITQ9BQ95 431 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 METTL14Q9HCE5 456 aaKnown RBP12.61□□□□□ -0.39
SHMT2-201ENST00000328923 GIT1Q9Y2X7 761 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 TTLL3Q9Y4R7 772 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 IVNS1ABPQ9Y6Y0 642 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 GOLGB1Q14789 3259 aaKnown RBP12.61□□□□□ -0.39
SHMT2-201ENST00000328923 RASA4BC9J798 803 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 DDX3XO00571 662 aaKnown RBP eCLIP12.61□□□□□ -0.398e-15■■□□□ 14.3
SHMT2-201ENST00000328923 CES2O00748 559 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 RASA4O43374 803 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 CALM1P0DP23 149 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 CALM2P0DP24 149 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 CALM3P0DP25 149 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 TKTP29401 623 aaKnown RBP12.61□□□□□ -0.39
SHMT2-201ENST00000328923 ACVR2BQ13705 512 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 IL17AQ16552 155 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 SHROOM1Q2M3G4 852 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-201ENST00000328923 FAM196AQ6ZSG2 479 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 GIPC3Q8TF64 312 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 CKAP2Q8WWK9 683 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 TRIM51Q9BSJ1 452 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 PLVAPQ9BX97 442 aa12.61□□□□□ -0.39
SHMT2-201ENST00000328923 CADM1Q9BY67 442 aaKnown RBP12.61□□□□□ -0.39
SHMT2-201ENST00000328923 EDEM3Q9BZQ6 932 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms