RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 DDIASQ8IXT1 998 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 MICU2Q8IYU8 434 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 RNPC3Q96LT9 517 aaKnown RBP15.04■□□□□ -0
COL7A1-201ENST00000328333 USP44Q9H0E7 712 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 USE1Q9NZ43 259 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 PALD1Q9ULE6 856 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 SOX13Q9UN79 622 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 PDIA2Q13087 525 aaKnown RBP15.04■□□□□ -0
COL7A1-201ENST00000328333 XXYLT1Q8NBI6 393 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 CLMNQ96JQ2 1002 aa15.04■□□□□ -0
COL7A1-201ENST00000328333 PSMD3O43242 534 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 HABP4Q5JVS0 413 aaKnown RBP15.03■□□□□ -0
COL7A1-201ENST00000328333 MAD2L2Q9UI95 211 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 ADGRG1Q9Y653 693 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 ADCY10Q96PN6 1610 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 PSMC3P17980 439 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 NIM1KQ8IY84 436 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 JADE3Q92613 823 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 CARD9Q9H257 536 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 NUP153P49790 1475 aaKnown RBP15.03■□□□□ -0
COL7A1-201ENST00000328333 LRRC53A6NM62 1247 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 FBXW10Q5XX13 1052 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 KLHL4Q9C0H6 718 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 PHF2O75151 1096 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 RASGRP2Q7LDG7 609 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 TEKT4Q8WW24 435 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 IFT43Q96FT9 208 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 NSL1Q96IY1 281 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 HEXIM2Q96MH2 286 aaKnown RBP15.03■□□□□ -0
COL7A1-201ENST00000328333 NPHS2Q9NP85 383 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 IMPAD1Q9NX62 359 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 SLC16A3O15427 465 aaKnown RBP15.03■□□□□ -0
COL7A1-201ENST00000328333 RECQLP46063 649 aaPredicted RBP15.03■□□□□ -0
COL7A1-201ENST00000328333 RBBP7Q16576 425 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 TAB3Q8N5C8 712 aaPredicted RBP15.03■□□□□ -0
COL7A1-201ENST00000328333 CALML6Q8TD86 181 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 RHBDL2Q9NX52 303 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.03■□□□□ -0
COL7A1-201ENST00000328333 LRCH1Q9Y2L9 728 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 DYTNA2CJ06 578 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 SDC4P31431 198 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 PEX5P50542 639 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 BBS2Q9BXC9 721 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 VPS11Q9H270 941 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 SNX24Q9Y343 169 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 MAP3K19Q56UN5 1328 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 PNMA6FA0A0J9YX94 578 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 KRT20P35900 424 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 ABCB5Q2M3G0 1257 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 CNOT8Q9UFF9 292 aaKnown RBP15.03■□□□□ -0
COL7A1-201ENST00000328333 RESTQ13127 1097 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 TCIRG1Q13488 830 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 FAM83BQ5T0W9 1011 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 LRRC39Q96DD0 335 aa15.03■□□□□ -0
COL7A1-201ENST00000328333 SNUPNO95149 360 aaKnown RBP15.02■□□□□ -0
COL7A1-201ENST00000328333 ENO1P06733 434 aaKnown RBP15.02■□□□□ -0
COL7A1-201ENST00000328333 CHN1P15882 459 aa15.02■□□□□ -0
COL7A1-201ENST00000328333 ALDH18A1P54886 795 aaKnown RBP15.02■□□□□ -0
COL7A1-201ENST00000328333 ARMC3Q5W041 872 aa15.02■□□□□ -0
COL7A1-201ENST00000328333 CNDP1Q96KN2 507 aa15.02■□□□□ -0
COL7A1-201ENST00000328333 KIAA0391O15091 583 aaKnown RBP15.02■□□□□ -0
COL7A1-201ENST00000328333 BFSP2Q13515 415 aa15.02■□□□□ -0
COL7A1-201ENST00000328333 LBRQ14739 615 aaKnown RBP15.02■□□□□ -0
COL7A1-201ENST00000328333 ZNF667Q5HYK9 610 aa15.02■□□□□ -0
COL7A1-201ENST00000328333 LRRC49Q8IUZ0 686 aa15.02■□□□□ -0
COL7A1-201ENST00000328333 APOL1O14791 398 aa15.02■□□□□ -0
COL7A1-201ENST00000328333 XPO1O14980 1071 aaKnown RBP15.02■□□□□ -0
COL7A1-201ENST00000328333 CDH24Q86UP0 819 aa15.02■□□□□ -0
COL7A1-201ENST00000328333 ERP27Q96DN0 273 aa15.02■□□□□ -0
COL7A1-201ENST00000328333 TOPORSQ9NS56 1045 aaPredicted RBP15.02■□□□□ -0
COL7A1-201ENST00000328333 PVALEFA0A1B0GWK0 134 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 ZNF197O14709 1029 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 S100A9P06702 114 aaKnown RBP15.02□□□□□ -0.01
COL7A1-201ENST00000328333 LRRC8DQ7L1W4 858 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 FRMD5Q7Z6J6 570 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 TBCKQ8TEA7 893 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 HSPH1Q92598 858 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 NCAPD2Q15021 1401 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 NCKAP1LP55160 1127 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 STX5Q13190 355 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 ZNF699Q32M78 642 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 PPM1NQ8N819 430 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 FLCNQ8NFG4 579 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 NLRP4Q96MN2 994 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 DHX36Q9H2U1 1008 aaKnown RBP15.02□□□□□ -0.01
COL7A1-201ENST00000328333 NOD2Q9HC29 1040 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 BTBD7Q9P203 1132 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 AKT3Q9Y243 479 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 PDZK1P1A8MUH7 402 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 CLPTM1O96005 669 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 SERPINH1P50454 418 aaKnown RBP15.02□□□□□ -0.01
COL7A1-201ENST00000328333 PSMC6P62333 389 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 C1DQ13901 141 aaKnown RBP15.02□□□□□ -0.01
COL7A1-201ENST00000328333 VCPKMTQ9H867 229 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 SFMBT1Q9UHJ3 866 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 SAMD9Q5K651 1589 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 ZNF18P17022 549 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 ASAP3Q8TDY4 903 aa15.02□□□□□ -0.01
COL7A1-201ENST00000328333 CYP4A11Q02928 519 aa15.01□□□□□ -0.01
COL7A1-201ENST00000328333 KYNUQ16719 465 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms