RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	MAM33	P40513	266 aa		4	□□□□□ -1.77
RRP40	YOL142W	SFH5	P47008	294 aa		4	□□□□□ -1.77
RRP40	YOL142W	STE24	P47154	453 aa		4	□□□□□ -1.77
RRP40	YOL142W	TRM9	P49957	279 aa		4	□□□□□ -1.77
RRP40	YOL142W	IGO1	P53897	168 aa		4	□□□□□ -1.77
RRP40	YOL142W	ACL4	Q03771	387 aa		4	□□□□□ -1.77
RRP40	YOL142W	YMR310C	Q04867	317 aa	Predicted RBP	4	□□□□□ -1.77
RRP40	YOL142W	DCS1	Q06151	350 aa		4	□□□□□ -1.77
RRP40	YOL142W	ASA1	Q06822	443 aa		4	□□□□□ -1.77
RRP40	YOL142W	IRC25	Q07951	179 aa		4	□□□□□ -1.77
RRP40	YOL142W	RPN6	Q12377	434 aa		4	□□□□□ -1.77
RRP40	YOL142W	THP2	O13539	261 aa	Known RBP	3.99	□□□□□ -1.77
RRP40	YOL142W	FAA1	P30624	700 aa	Known RBP	3.99	□□□□□ -1.77
RRP40	YOL142W	ATP7	P30902	174 aa		3.99	□□□□□ -1.77
RRP40	YOL142W	DEP1	P31385	405 aa		3.99	□□□□□ -1.77
RRP40	YOL142W	FZO1	P38297	855 aa		3.99	□□□□□ -1.77
RRP40	YOL142W	AIM2	P39721	246 aa		3.99	□□□□□ -1.77
RRP40	YOL142W	MTW1	P39731	289 aa		3.99	□□□□□ -1.77
RRP40	YOL142W	CDH1	P53197	566 aa		3.99	□□□□□ -1.77
RRP40	YOL142W	OCA2	P53949	197 aa		3.99	□□□□□ -1.77
RRP40	YOL142W	YNL033W	P53964	284 aa		3.99	□□□□□ -1.77
RRP40	YOL142W	YNL019C	P53975	284 aa		3.99	□□□□□ -1.77
RRP40	YOL142W	BCP1	Q06338	283 aa		3.99	□□□□□ -1.77
RRP40	YOL142W	GLE1	Q12315	538 aa		3.99	□□□□□ -1.77
RRP40	YOL142W	SOD1	P00445	154 aa	Known RBP	3.98	□□□□□ -1.77
RRP40	YOL142W	NUP2	P32499	720 aa		3.98	□□□□□ -1.77
RRP40	YOL142W	SSE1	P32589	693 aa	Known RBP	3.98	□□□□□ -1.77
RRP40	YOL142W	YHR177W	P38867	453 aa		3.98	□□□□□ -1.77
RRP40	YOL142W	MNN9	P39107	395 aa	Known RBP	3.98	□□□□□ -1.77
RRP40	YOL142W	JEM1	P40358	645 aa		3.98	□□□□□ -1.77
RRP40	YOL142W	ICE2	P40499	491 aa		3.98	□□□□□ -1.77
RRP40	YOL142W	SPC19	Q03954	165 aa		3.98	□□□□□ -1.77
RRP40	YOL142W	ERB1	Q04660	807 aa	Known RBP	3.98	□□□□□ -1.77
RRP40	YOL142W	SSQ1	Q05931	657 aa	Predicted RBP	3.98	□□□□□ -1.77
RRP40	YOL142W	MFG1	Q07684	458 aa		3.98	□□□□□ -1.77
RRP40	YOL142W	YLL007C	Q07799	665 aa		3.98	□□□□□ -1.77
RRP40	YOL142W	YLR036C	Q07986	203 aa		3.98	□□□□□ -1.77
RRP40	YOL142W	YPL278C	Q08990	100 aa		3.98	□□□□□ -1.77
RRP40	YOL142W	PRP8	P33334	2413 aa	Known RBP	3.97	□□□□□ -1.77
RRP40	YOL142W	HOM3	P10869	527 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	GAL3	P13045	520 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	PDX1	P16451	410 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	RPB5	P20434	215 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	ERV1	P27882	189 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	PMT2	P31382	759 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	TFC1	P32367	649 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	DPH5	P32469	300 aa	Predicted RBP	3.97	□□□□□ -1.77
RRP40	YOL142W	MKK1	P32490	508 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	SKG1	P36169	355 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	RIB1	P38066	345 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	RCK1	P38622	512 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	LYS12	P40495	371 aa	Known RBP	3.97	□□□□□ -1.77
RRP40	YOL142W	UTP25	P40498	721 aa	Known RBP	3.97	□□□□□ -1.77
RRP40	YOL142W	MDE1	P47095	244 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	PAC10	P48363	199 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	GET1	P53192	235 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	RSM10	Q03201	203 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	SNT309	Q06091	175 aa	Predicted RBP	3.97	□□□□□ -1.77
RRP40	YOL142W	ARR1	Q06596	294 aa		3.97	□□□□□ -1.77
RRP40	YOL142W	YPR174C	Q06616	221 aa	Predicted RBP	3.97	□□□□□ -1.77
RRP40	YOL142W	RAD7	P06779	565 aa		3.96	□□□□□ -1.78
RRP40	YOL142W	LHP1	P33399	275 aa	Known RBP	3.96	□□□□□ -1.78
RRP40	YOL142W	CAB3	P36076	571 aa		3.96	□□□□□ -1.78
RRP40	YOL142W	SLM4	P38247	162 aa		3.96	□□□□□ -1.78
RRP40	YOL142W	TRR2	P38816	342 aa		3.96	□□□□□ -1.78
RRP40	YOL142W	CAK1	P43568	368 aa	Predicted RBP	3.96	□□□□□ -1.78
RRP40	YOL142W	KEL2	P50090	882 aa		3.96	□□□□□ -1.78
RRP40	YOL142W	TPC1	P53257	314 aa		3.96	□□□□□ -1.78
RRP40	YOL142W	NUP116	Q02630	1113 aa		3.96	□□□□□ -1.78
RRP40	YOL142W	HOT1	Q03213	719 aa		3.96	□□□□□ -1.78
RRP40	YOL142W	SPC2	Q04969	178 aa		3.96	□□□□□ -1.78
RRP40	YOL142W	GMC2	Q06201	188 aa		3.96	□□□□□ -1.78
RRP40	YOL142W	MED2	Q12124	431 aa		3.96	□□□□□ -1.78
RRP40	YOL142W	TPT1	Q12272	230 aa	Known RBP	3.96	□□□□□ -1.78
RRP40	YOL142W	SEC16	P48415	2195 aa	Known RBP	3.96	□□□□□ -1.78
RRP40	YOL142W	YBR056W-A	I2HB52	66 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	MER1	P16523	270 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	RPS1B	P23248	255 aa	Known RBP	3.95	□□□□□ -1.78
RRP40	YOL142W	PDX3	P38075	228 aa	Known RBP	3.95	□□□□□ -1.78
RRP40	YOL142W	YBR241C	P38142	488 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	CHK1	P38147	527 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	FES1	P38260	290 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	MPM1	P40364	252 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	ALB1	P47019	175 aa	Predicted RBP	3.95	□□□□□ -1.78
RRP40	YOL142W	YJR085C	P47131	105 aa	Known RBP	3.95	□□□□□ -1.78
RRP40	YOL142W	ATP22	P50273	684 aa	Predicted RBP	3.95	□□□□□ -1.78
RRP40	YOL142W	YGR067C	P53243	804 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	YNR068C	P53754	272 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	SPR6	Q01684	191 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	GPI11	Q06636	219 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	YPR091C	Q06833	770 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	SKS1	Q12505	502 aa		3.95	□□□□□ -1.78
RRP40	YOL142W	CDC39	P25655	2108 aa	Known RBP	3.95	□□□□□ -1.78
RRP40	YOL142W	BLM10	P43583	2143 aa		3.94	□□□□□ -1.78
RRP40	YOL142W	RPL24A	P04449	155 aa	Known RBP	3.94	□□□□□ -1.78
RRP40	YOL142W	ZWF1	P11412	505 aa	Known RBP	3.94	□□□□□ -1.78
RRP40	YOL142W	CMK2	P22517	447 aa		3.94	□□□□□ -1.78
RRP40	YOL142W	PEX3	P28795	441 aa		3.94	□□□□□ -1.78
RRP40	YOL142W	SBE22	P38814	852 aa		3.94	□□□□□ -1.78
RRP40	YOL142W	TOM22	P49334	152 aa		3.94	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 108.5 ms