RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	GPB1	Q08886	897 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	FDH1	Q08911	376 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	YLR050C	Q12155	161 aa	Known RBP	4.6	□□□□□ -1.67
SEC39	YLR440C	YCR075W-A	Q3E830	75 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	MES1	P00958	751 aa	Known RBP	4.6	□□□□□ -1.67
SEC39	YLR440C	VAR1	P02381	398 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	RPL9A	P05738	191 aa	Known RBP	4.6	□□□□□ -1.67
SEC39	YLR440C	PHO80	P20052	293 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	EPT1	P22140	391 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	NAR1	P23503	491 aa	Known RBP	4.6	□□□□□ -1.67
SEC39	YLR440C	APE2	P32454	952 aa	Known RBP	4.6	□□□□□ -1.67
SEC39	YLR440C	TRS65	P32893	560 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	SPT23	P35210	1082 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	YEA6	P39953	335 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	BMT5	P40493	336 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	IST3	P40565	148 aa	Predicted RBP	4.6	□□□□□ -1.67
SEC39	YLR440C	AIM23	P47015	356 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	ASN2	P49090	572 aa	Known RBP	4.6	□□□□□ -1.67
SEC39	YLR440C	RPL9B	P51401	191 aa	Known RBP	4.6	□□□□□ -1.67
SEC39	YLR440C	POP6	P53218	158 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	MRPS35	P53292	345 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	MKC7	P53379	596 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	MPA43	P53583	542 aa	Predicted RBP	4.6	□□□□□ -1.67
SEC39	YLR440C	SMX3	P54999	86 aa	Predicted RBP	4.6	□□□□□ -1.67
SEC39	YLR440C	DAD3	P69850	94 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	SHR3	Q02774	210 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	AIM36	Q03798	255 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	SMP3	Q04174	516 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	PRM6	Q04705	352 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
SEC39	YLR440C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
SEC39	YLR440C	YPL260W	Q08977	551 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	YCT1	Q12235	531 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	GEP5	Q12393	293 aa		4.6	□□□□□ -1.67
SEC39	YLR440C	FLP1	P03870	423 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	RPL3	P14126	387 aa	Known RBP	4.59	□□□□□ -1.67
SEC39	YLR440C	FUB1	P25659	250 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	INO2	P26798	304 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	COQ3	P27680	312 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	FRE2	P36033	711 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	FSH1	P38777	243 aa	Known RBP	4.59	□□□□□ -1.67
SEC39	YLR440C	GAT1	P43574	510 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	MGA1	P53050	456 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	GOT1	Q03554	138 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	SHH3	Q04487	196 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	CNL1	Q06333	122 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	HNT3	Q08702	217 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	YOR283W	Q12040	230 aa	Known RBP	4.59	□□□□□ -1.67
SEC39	YLR440C	SUT2	Q12286	268 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	YDL199C	Q12407	687 aa		4.59	□□□□□ -1.67
SEC39	YLR440C	HRP1	Q99383	534 aa	Known RBP	4.59	□□□□□ -1.67
SEC39	YLR440C	GPI12	P23797	304 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	YKL107W	P34251	309 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	OMA1	P36163	345 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	YER158C	P40095	573 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	PRE6	P40303	254 aa	Known RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	GLR1	P41921	483 aa	Known RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	MEP2	P41948	499 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	YJL045W	P47052	634 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	UBC12	P52491	188 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	YIP5	P53108	310 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	SOK2	P53438	785 aa	Predicted RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
SEC39	YLR440C	YHC1	Q05900	231 aa	Known RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	YLR407W	Q06070	228 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	GRX2	P17695	143 aa	Known RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	RPB8	P20436	146 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	SCO1	P23833	295 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	BUB2	P26448	306 aa	Predicted RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	HOM6	P31116	359 aa	Known RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	UTR4	P32626	227 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	SSS1	P35179	80 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	YOR062C	P36025	268 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	PAN3	P36102	679 aa	Predicted RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	QDR3	P38227	689 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	MTC4	P38335	694 aa	Known RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	YHR033W	P38690	423 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	LST7	P53237	242 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	YGR283C	P53336	341 aa	Predicted RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	YNL010W	P53981	241 aa	Known RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	RSM23	Q01163	450 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	HSP31	Q04432	237 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	YMR315W	Q04869	349 aa	Known RBP	4.58	□□□□□ -1.68
SEC39	YLR440C	HOF1	Q05080	669 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	MCH1	Q07376	486 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	PLB3	Q08108	686 aa		4.58	□□□□□ -1.68
SEC39	YLR440C	RHO2	P06781	192 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	ATR1	P13090	542 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	SPO12	P17123	173 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	FUN14	P18411	198 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	ELO2	P25358	347 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	MGT1	P26188	188 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	MSS51	P32335	436 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	COQ2	P32378	372 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	SRB6	P32570	121 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	FRM2	P37261	193 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	YBR013C	P38215	129 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	AYR1	P40471	297 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	TIR3	P40552	269 aa		4.57	□□□□□ -1.68
SEC39	YLR440C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.57	□□□□□ -1.68	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 69.9 ms