RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeastyeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC4YFL005W SWT21P53873 357 aaPredicted RBP2.38□□□□□ -2.03
SEC4YFL005W ALG11P53954 548 aaKnown RBP2.38□□□□□ -2.03
SEC4YFL005W OSH6Q02201 448 aa2.38□□□□□ -2.03
SEC4YFL005W SDC1Q03323 175 aa2.38□□□□□ -2.03
SEC4YFL005W GTO3Q04806 366 aa2.38□□□□□ -2.03
SEC4YFL005W COX20Q04935 205 aa2.38□□□□□ -2.03
SEC4YFL005W LOA1Q06508 300 aa2.38□□□□□ -2.03
SEC4YFL005W ARV1Q06541 321 aa2.38□□□□□ -2.03
SEC4YFL005W CTR3Q06686 241 aa2.38□□□□□ -2.03
SEC4YFL005W RRT8Q08219 342 aa2.38□□□□□ -2.03
SEC4YFL005W YPR063CQ12160 140 aa2.38□□□□□ -2.03
SEC4YFL005W PRM7Q12459 698 aa2.38□□□□□ -2.03
SEC4YFL005W YOL163WP0CF20 169 aa2.37□□□□□ -2.03
SEC4YFL005W DAL82P21705 255 aa2.37□□□□□ -2.03
SEC4YFL005W CAM1P29547 415 aaKnown RBP2.37□□□□□ -2.03
SEC4YFL005W PHO89P38361 574 aa2.37□□□□□ -2.03
SEC4YFL005W YHI9P38765 294 aa2.37□□□□□ -2.03
SEC4YFL005W ECM14P38836 430 aa2.37□□□□□ -2.03
SEC4YFL005W SER33P40510 469 aa2.37□□□□□ -2.03
SEC4YFL005W YJL118WP47022 219 aa2.37□□□□□ -2.03
SEC4YFL005W RSM27P53305 110 aa2.37□□□□□ -2.03
SEC4YFL005W TVP15Q03860 143 aa2.37□□□□□ -2.03
SEC4YFL005W YDR222WQ04925 415 aa2.37□□□□□ -2.03
SEC4YFL005W DXO1Q06349 442 aa2.37□□□□□ -2.03
SEC4YFL005W SME1Q12330 94 aaPredicted RBP2.37□□□□□ -2.03
SEC4YFL005W ATG5Q12380 294 aa2.37□□□□□ -2.03
SEC4YFL005W MSF1P08425 469 aa2.36□□□□□ -2.03
SEC4YFL005W MRP1P10662 321 aaKnown RBP2.36□□□□□ -2.03
SEC4YFL005W RPL4AP10664 362 aaKnown RBP2.36□□□□□ -2.03
SEC4YFL005W RSR1P13856 272 aa2.36□□□□□ -2.03
SEC4YFL005W RRT12P25381 491 aa2.36□□□□□ -2.03
SEC4YFL005W ERG2P32352 222 aa2.36□□□□□ -2.03
SEC4YFL005W RPT5P33297 434 aaKnown RBP2.36□□□□□ -2.03
SEC4YFL005W TRM7P38238 310 aaKnown RBP2.36□□□□□ -2.03
SEC4YFL005W ECO1P43605 281 aa2.36□□□□□ -2.03
SEC4YFL005W RPE1P46969 238 aa2.36□□□□□ -2.03
SEC4YFL005W RPL4BP49626 362 aaKnown RBP2.36□□□□□ -2.03
SEC4YFL005W FMP41P53889 259 aaKnown RBP2.36□□□□□ -2.03
SEC4YFL005W SWS2P53937 143 aa2.36□□□□□ -2.03
SEC4YFL005W OST6Q03723 332 aa2.36□□□□□ -2.03
SEC4YFL005W ADH6Q04894 360 aaKnown RBP2.36□□□□□ -2.03
SEC4YFL005W BTS1Q12051 335 aa2.36□□□□□ -2.03
SEC4YFL005W RPS23AP0CX29 145 aaKnown RBP2.35□□□□□ -2.03
SEC4YFL005W RPS23BP0CX30 145 aa2.35□□□□□ -2.03
SEC4YFL005W TKL2P33315 681 aa2.35□□□□□ -2.03
SEC4YFL005W YBL081WP38180 368 aaKnown RBP2.35□□□□□ -2.03
SEC4YFL005W SMC2P38989 1170 aaKnown RBP2.35□□□□□ -2.03
SEC4YFL005W BUD13P46947 266 aaPredicted RBP2.35□□□□□ -2.03
SEC4YFL005W NBP35P52920 328 aa2.35□□□□□ -2.03
SEC4YFL005W YNL095CP53932 642 aa2.35□□□□□ -2.03
SEC4YFL005W APJ1P53940 528 aa2.35□□□□□ -2.03
SEC4YFL005W RRN5Q02983 363 aa2.35□□□□□ -2.03
SEC4YFL005W YOL107WQ12239 342 aa2.35□□□□□ -2.03
SEC4YFL005W PRR2Q12310 699 aa2.35□□□□□ -2.03
SEC4YFL005W AI5_BETAQ9ZZX0 354 aa2.35□□□□□ -2.03
SEC4YFL005W COY1P34237 679 aa2.34□□□□□ -2.03
SEC4YFL005W HMT1P38074 348 aa2.34□□□□□ -2.03
SEC4YFL005W SPL2P38839 148 aa2.34□□□□□ -2.03
SEC4YFL005W SUR2P38992 349 aa2.34□□□□□ -2.03
SEC4YFL005W RPL10P41805 221 aaKnown RBP2.34□□□□□ -2.03
SEC4YFL005W YJR012CP47087 207 aa2.34□□□□□ -2.03
SEC4YFL005W MAL13P53338 473 aa2.34□□□□□ -2.03
SEC4YFL005W CTS2Q06350 511 aa2.34□□□□□ -2.03
SEC4YFL005W YPL150WQ12152 901 aa2.34□□□□□ -2.03
SEC4YFL005W STH1P32597 1359 aa2.34□□□□□ -2.04
SEC4YFL005W CSG2P35206 410 aa2.33□□□□□ -2.04
SEC4YFL005W PRS2P38620 318 aaKnown RBP2.33□□□□□ -2.04
SEC4YFL005W DSN1P40568 576 aa2.33□□□□□ -2.04
SEC4YFL005W HSH155P49955 971 aaKnown RBP2.33□□□□□ -2.04
SEC4YFL005W YLR173WQ06247 608 aa2.33□□□□□ -2.04
SEC4YFL005W MRX4Q12467 430 aa2.33□□□□□ -2.04
SEC4YFL005W RAD3P06839 778 aa2.32□□□□□ -2.04
SEC4YFL005W ZWF1P11412 505 aaKnown RBP2.32□□□□□ -2.04
SEC4YFL005W VPS3P23643 1011 aa2.32□□□□□ -2.04
SEC4YFL005W CWP1P28319 239 aa2.32□□□□□ -2.04
SEC4YFL005W IME2P32581 645 aa2.32□□□□□ -2.04
SEC4YFL005W PRS4P38063 326 aaPredicted RBP2.32□□□□□ -2.04
SEC4YFL005W SPO73P40031 143 aa2.32□□□□□ -2.04
SEC4YFL005W OST3P48439 350 aa2.32□□□□□ -2.04
SEC4YFL005W MIG2P53035 382 aa2.32□□□□□ -2.04
SEC4YFL005W SLX9P53251 210 aaPredicted RBP2.32□□□□□ -2.04
SEC4YFL005W ALG9P53868 555 aaKnown RBP2.32□□□□□ -2.04
SEC4YFL005W SDO1Q07953 250 aaKnown RBP2.32□□□□□ -2.04
SEC4YFL005W COS2P0CX12 379 aa2.31□□□□□ -2.04
SEC4YFL005W COS3P0CX13 379 aa2.31□□□□□ -2.04
SEC4YFL005W QRI5P32344 111 aa2.31□□□□□ -2.04
SEC4YFL005W SKI2P35207 1287 aaKnown RBP RIP-Chip data2.31□□□□□ -2.04not detected
SEC4YFL005W MRX3P38172 270 aa2.31□□□□□ -2.04
SEC4YFL005W YHL049CP38722 271 aa2.31□□□□□ -2.04
SEC4YFL005W ARN2P38724 620 aa2.31□□□□□ -2.04
SEC4YFL005W BIG1P38813 335 aa2.31□□□□□ -2.04
SEC4YFL005W YPL039WQ03080 316 aa2.31□□□□□ -2.04
SEC4YFL005W EBS1Q03466 884 aaKnown RBP2.31□□□□□ -2.04
SEC4YFL005W YDR114CQ04597 100 aa2.31□□□□□ -2.04
SEC4YFL005W RLP24Q07915 199 aaKnown RBP2.31□□□□□ -2.04
SEC4YFL005W TIM22Q12328 207 aa2.31□□□□□ -2.04
SEC4YFL005W MED4Q12343 284 aa2.31□□□□□ -2.04
SEC4YFL005W SNF8Q12483 233 aa2.31□□□□□ -2.04
SEC4YFL005W ISD11Q6Q560 94 aa2.31□□□□□ -2.04
SEC4YFL005W YEL009C-AA0A023PZF2 135 aa2.3□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 18.9 ms