RNA–Protein interactions for RNA: YDR240C

SNU56, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNU56, Length 1,479 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNU56YDR240C ECM18Q04623 453 aa1.4□□□□□ -2.19
SNU56YDR240C SMT3Q12306 101 aaKnown RBP1.4□□□□□ -2.19
SNU56YDR240C SPT7P35177 1332 aa1.4□□□□□ -2.19
SNU56YDR240C ATP6P00854 259 aa1.39□□□□□ -2.19
SNU56YDR240C RAD10P06838 210 aa1.39□□□□□ -2.19
SNU56YDR240C CAR2P07991 424 aaKnown RBP1.39□□□□□ -2.19
SNU56YDR240C RPS0AP32905 252 aaKnown RBP1.39□□□□□ -2.19
SNU56YDR240C YOR062CP36025 268 aa1.39□□□□□ -2.19
SNU56YDR240C YFR054CP43622 192 aa1.39□□□□□ -2.19
SNU56YDR240C TAF9Q05027 157 aa1.39□□□□□ -2.19
SNU56YDR240C YBL112CQ3E7Y4 105 aa1.39□□□□□ -2.19
SNU56YDR240C SPT4P32914 102 aaPredicted RBP1.38□□□□□ -2.19
SNU56YDR240C CSG2P35206 410 aa1.38□□□□□ -2.19
SNU56YDR240C YIA6P40556 373 aa1.38□□□□□ -2.19
SNU56YDR240C VPS60Q03390 229 aa1.38□□□□□ -2.19
SNU56YDR240C YMR114CQ04471 368 aaKnown RBP1.38□□□□□ -2.19
SNU56YDR240C YOL019WQ08157 551 aa1.38□□□□□ -2.19
SNU56YDR240C SFC1P33303 322 aa1.37□□□□□ -2.19
SNU56YDR240C RIB4P50861 169 aaPredicted RBP1.37□□□□□ -2.19
SNU56YDR240C ASR1Q06834 288 aa1.37□□□□□ -2.19
SNU56YDR240C YMR316C-AI2HB70 103 aa1.37□□□□□ -2.19
SNU56YDR240C PET494P07390 489 aaPredicted RBP1.37□□□□□ -2.19
SNU56YDR240C SAR1P20606 190 aaKnown RBP1.37□□□□□ -2.19
SNU56YDR240C ARN2P38724 620 aa1.37□□□□□ -2.19
SNU56YDR240C VOA1P53262 265 aa1.37□□□□□ -2.19
SNU56YDR240C DBP6P53734 629 aaKnown RBP1.37□□□□□ -2.19
SNU56YDR240C BOL1Q3E793 110 aa1.37□□□□□ -2.19
SNU56YDR240C RAD3P06839 778 aa1.36□□□□□ -2.19
SNU56YDR240C PPH21P23594 369 aa1.36□□□□□ -2.19
SNU56YDR240C DPB2P24482 689 aaPredicted RBP1.36□□□□□ -2.19
SNU56YDR240C YCR102CP25608 368 aa1.36□□□□□ -2.19
SNU56YDR240C CAM1P29547 415 aaKnown RBP1.36□□□□□ -2.19
SNU56YDR240C HMT1P38074 348 aa1.36□□□□□ -2.19
SNU56YDR240C TDA11P38854 504 aa1.36□□□□□ -2.19
SNU56YDR240C TEM1P38987 245 aa1.36□□□□□ -2.19
SNU56YDR240C GON7P46984 123 aa1.36□□□□□ -2.19
SNU56YDR240C YJL118WP47022 219 aa1.36□□□□□ -2.19
SNU56YDR240C IBA57P47158 497 aa1.36□□□□□ -2.19
SNU56YDR240C FMP41P53889 259 aaKnown RBP1.36□□□□□ -2.19
SNU56YDR240C SDC1Q03323 175 aa1.36□□□□□ -2.19
SNU56YDR240C YMR111CQ04461 462 aaPredicted RBP1.36□□□□□ -2.19
SNU56YDR240C VMA2P16140 517 aaKnown RBP1.35□□□□□ -2.19
SNU56YDR240C SCM4P32564 187 aa1.35□□□□□ -2.19
SNU56YDR240C SWI3P32591 825 aa1.35□□□□□ -2.19
SNU56YDR240C GDH2P33327 1092 aaKnown RBP1.35□□□□□ -2.19
SNU56YDR240C KEL2P50090 882 aa1.35□□□□□ -2.19
SNU56YDR240C PEX12Q04370 399 aa1.35□□□□□ -2.19
SNU56YDR240C RRG8Q06109 277 aa1.35□□□□□ -2.19
SNU56YDR240C GPN3Q06543 272 aa1.35□□□□□ -2.19
SNU56YDR240C YPL247CQ12523 523 aa1.35□□□□□ -2.19
SNU56YDR240C PEX3P28795 441 aa1.34□□□□□ -2.19
SNU56YDR240C BLI1P35727 113 aa1.34□□□□□ -2.19
SNU56YDR240C YDR089WP38966 869 aa1.34□□□□□ -2.19
SNU56YDR240C AGP3P43548 558 aa1.34□□□□□ -2.19
SNU56YDR240C AGX1P43567 385 aa1.34□□□□□ -2.19
SNU56YDR240C DAD3P69850 94 aa1.34□□□□□ -2.19
SNU56YDR240C BER1Q06688 274 aaKnown RBP1.34□□□□□ -2.19
SNU56YDR240C YAL064W-BO13512 126 aa1.33□□□□□ -2.2
SNU56YDR240C PUT1P09368 476 aa1.33□□□□□ -2.2
SNU56YDR240C GCD2P12754 651 aaPredicted RBP1.33□□□□□ -2.2
SNU56YDR240C RPC25P35718 212 aa1.33□□□□□ -2.2
SNU56YDR240C AYR1P40471 297 aa1.33□□□□□ -2.2
SNU56YDR240C TAD2P47058 250 aa1.33□□□□□ -2.2
SNU56YDR240C YNL050CP53952 270 aa1.33□□□□□ -2.2
SNU56YDR240C TRM44Q02648 567 aaKnown RBP1.33□□□□□ -2.2
SNU56YDR240C VAC14Q06708 880 aa1.33□□□□□ -2.2
SNU56YDR240C UBR2Q07963 1872 aa1.33□□□□□ -2.2
SNU56YDR240C ILV1P00927 576 aaKnown RBP1.32□□□□□ -2.2
SNU56YDR240C COS2P0CX12 379 aa1.32□□□□□ -2.2
SNU56YDR240C COS3P0CX13 379 aa1.32□□□□□ -2.2
SNU56YDR240C RNP1P32385 249 aa1.32□□□□□ -2.2
SNU56YDR240C NPT1P39683 429 aaKnown RBP1.32□□□□□ -2.2
SNU56YDR240C LOC1P43586 204 aaPredicted RBP1.32□□□□□ -2.2
SNU56YDR240C NIF3P53081 288 aa1.32□□□□□ -2.2
SNU56YDR240C ASI3P53983 676 aa1.32□□□□□ -2.2
SNU56YDR240C PRO2P54885 456 aaKnown RBP1.32□□□□□ -2.2
SNU56YDR240C LOA1Q06508 300 aa1.32□□□□□ -2.2
SNU56YDR240C PGC1Q08959 321 aa1.32□□□□□ -2.2
SNU56YDR240C POM33Q12164 279 aa1.32□□□□□ -2.2
SNU56YDR240C RPS3P05750 240 aaKnown RBP1.31□□□□□ -2.2
SNU56YDR240C CCA1P21269 546 aa1.31□□□□□ -2.2
SNU56YDR240C DOA4P32571 926 aa1.31□□□□□ -2.2
SNU56YDR240C SKI2P35207 1287 aaKnown RBP RIP-Chip data1.31□□□□□ -2.2not detected
SNU56YDR240C LSM4P40070 187 aaKnown RBP1.31□□□□□ -2.2
SNU56YDR240C SEC10Q06245 871 aa1.31□□□□□ -2.2
SNU56YDR240C YOS9Q99220 542 aa1.31□□□□□ -2.2
SNU56YDR240C CYR1P08678 2026 aaKnown RBP1.31□□□□□ -2.2
SNU56YDR240C HIS2P38635 335 aa1.31□□□□□ -2.2
SNU56YDR240C VPS45P38932 577 aa1.31□□□□□ -2.2
SNU56YDR240C GEP5Q12393 293 aa1.31□□□□□ -2.2
SNU56YDR240C TPM1P17536 199 aaKnown RBP1.3□□□□□ -2.2
SNU56YDR240C GPI12P23797 304 aa1.3□□□□□ -2.2
SNU56YDR240C MNN9P39107 395 aaKnown RBP1.3□□□□□ -2.2
SNU56YDR240C SNX4P47057 423 aa1.3□□□□□ -2.2
SNU56YDR240C YJL028WP47062 111 aa1.3□□□□□ -2.2
SNU56YDR240C SLX9P53251 210 aaPredicted RBP1.3□□□□□ -2.2
SNU56YDR240C YDR286CQ05530 114 aa1.3□□□□□ -2.2
SNU56YDR240C SAS5Q99314 248 aa1.3□□□□□ -2.2
SNU56YDR240C ICL1P28240 557 aaPredicted RBP1.29□□□□□ -2.2
SNU56YDR240C RPL10P41805 221 aaKnown RBP1.29□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 28.7 ms