RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W YBL112CQ3E7Y4 105 aa0.36□□□□□ -2.35
PRP42YDR235W ILV1P00927 576 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W PET494P07390 489 aaPredicted RBP0.35□□□□□ -2.35
PRP42YDR235W MSS116P15424 664 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W SAR1P20606 190 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W TRX1P22217 103 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W TOM40P23644 387 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W ICL1P28240 557 aaPredicted RBP0.35□□□□□ -2.35
PRP42YDR235W CAM1P29547 415 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W CSG2P35206 410 aa0.35□□□□□ -2.35
PRP42YDR235W YHL026CP38740 315 aa0.35□□□□□ -2.35
PRP42YDR235W YHI9P38765 294 aa0.35□□□□□ -2.35
PRP42YDR235W FCY21P40039 528 aa0.35□□□□□ -2.35
PRP42YDR235W LSM4P40070 187 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W COG3P40094 801 aa0.35□□□□□ -2.35
PRP42YDR235W MRPL49P40858 161 aaPredicted RBP0.35□□□□□ -2.35
PRP42YDR235W YJL016WP47072 561 aa0.35□□□□□ -2.35
PRP42YDR235W MPP10P47083 593 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W GTO1P48239 356 aa0.35□□□□□ -2.35
PRP42YDR235W KEL2P50090 882 aa0.35□□□□□ -2.35
PRP42YDR235W MND1P53102 219 aa0.35□□□□□ -2.35
PRP42YDR235W VOA1P53262 265 aa0.35□□□□□ -2.35
PRP42YDR235W DBP6P53734 629 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W FMP41P53889 259 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W VPS60Q03390 229 aa0.35□□□□□ -2.35
PRP42YDR235W YMR114CQ04471 368 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W TAF9Q05027 157 aa0.35□□□□□ -2.35
PRP42YDR235W EMC6Q12431 108 aa0.35□□□□□ -2.35
PRP42YDR235W ATP6P00854 259 aa0.35□□□□□ -2.35
PRP42YDR235W GPI12P23797 304 aa0.35□□□□□ -2.35
PRP42YDR235W DPB2P24482 689 aaPredicted RBP0.35□□□□□ -2.35
PRP42YDR235W YCR102CP25608 368 aa0.35□□□□□ -2.35
PRP42YDR235W CSM1P25651 190 aa0.35□□□□□ -2.35
PRP42YDR235W SFC1P33303 322 aa0.35□□□□□ -2.35
PRP42YDR235W RPC25P35718 212 aa0.35□□□□□ -2.35
PRP42YDR235W YOR062CP36025 268 aa0.35□□□□□ -2.35
PRP42YDR235W HMT1P38074 348 aa0.35□□□□□ -2.35
PRP42YDR235W HIS2P38635 335 aa0.35□□□□□ -2.35
PRP42YDR235W CDC40P40968 455 aaPredicted RBP0.35□□□□□ -2.35
PRP42YDR235W RPL10P41805 221 aaKnown RBP0.35□□□□□ -2.35
PRP42YDR235W AGP3P43548 558 aa0.35□□□□□ -2.35
PRP42YDR235W LOH1P47055 219 aa0.35□□□□□ -2.35
PRP42YDR235W TAD2P47058 250 aa0.35□□□□□ -2.35
PRP42YDR235W NIF3P53081 288 aa0.35□□□□□ -2.35
PRP42YDR235W CPD1P53314 239 aa0.35□□□□□ -2.35
PRP42YDR235W CAB4P53332 305 aa0.35□□□□□ -2.35
PRP42YDR235W CUR1Q06469 252 aa0.35□□□□□ -2.35
PRP42YDR235W GPN3Q06543 272 aa0.35□□□□□ -2.35
PRP42YDR235W VAC14Q06708 880 aa0.35□□□□□ -2.35
PRP42YDR235W PGC1Q08959 321 aa0.35□□□□□ -2.35
PRP42YDR235W PST1Q12355 444 aa0.35□□□□□ -2.35
PRP42YDR235W NOT5Q12514 560 aaPredicted RBP0.35□□□□□ -2.35
PRP42YDR235W RPS3P05750 240 aaKnown RBP0.34□□□□□ -2.36
PRP42YDR235W GCD2P12754 651 aaPredicted RBP0.34□□□□□ -2.36
PRP42YDR235W VMA2P16140 517 aaKnown RBP0.34□□□□□ -2.36
PRP42YDR235W RNP1P32385 249 aa0.34□□□□□ -2.36
PRP42YDR235W DOA4P32571 926 aa0.34□□□□□ -2.36
PRP42YDR235W GDH2P33327 1092 aaKnown RBP0.34□□□□□ -2.36
PRP42YDR235W MAL32P38158 584 aa0.34□□□□□ -2.36
PRP42YDR235W YDR089WP38966 869 aa0.34□□□□□ -2.36
PRP42YDR235W TEM1P38987 245 aa0.34□□□□□ -2.36
PRP42YDR235W MNN9P39107 395 aaKnown RBP0.34□□□□□ -2.36
PRP42YDR235W YJL118WP47022 219 aa0.34□□□□□ -2.36
PRP42YDR235W YJL028WP47062 111 aa0.34□□□□□ -2.36
PRP42YDR235W IBA57P47158 497 aa0.34□□□□□ -2.36
PRP42YDR235W MDM34P53083 459 aa0.34□□□□□ -2.36
PRP42YDR235W PEX31P53203 462 aa0.34□□□□□ -2.36
PRP42YDR235W MAL12P53341 584 aa0.34□□□□□ -2.36
PRP42YDR235W SDC1Q03323 175 aa0.34□□□□□ -2.36
PRP42YDR235W EBS1Q03466 884 aaKnown RBP0.34□□□□□ -2.36
PRP42YDR235W PEX12Q04370 399 aa0.34□□□□□ -2.36
PRP42YDR235W RRG8Q06109 277 aa0.34□□□□□ -2.36
PRP42YDR235W LOA1Q06508 300 aa0.34□□□□□ -2.36
PRP42YDR235W BER1Q06688 274 aaKnown RBP0.34□□□□□ -2.36
PRP42YDR235W SLD7Q08457 257 aa0.34□□□□□ -2.36
PRP42YDR235W SMT3Q12306 101 aaKnown RBP0.34□□□□□ -2.36
PRP42YDR235W GEP5Q12393 293 aa0.34□□□□□ -2.36
PRP42YDR235W YPL247CQ12523 523 aa0.34□□□□□ -2.36
PRP42YDR235W BOL1Q3E793 110 aa0.34□□□□□ -2.36
PRP42YDR235W YAL064W-BO13512 126 aa0.33□□□□□ -2.36
PRP42YDR235W STF1P01098 86 aa0.33□□□□□ -2.36
PRP42YDR235W RAD3P06839 778 aa0.33□□□□□ -2.36
PRP42YDR235W PUT1P09368 476 aa0.33□□□□□ -2.36
PRP42YDR235W RPL4AP10664 362 aaKnown RBP0.33□□□□□ -2.36
PRP42YDR235W PEX3P28795 441 aa0.33□□□□□ -2.36
PRP42YDR235W SCM4P32564 187 aa0.33□□□□□ -2.36
PRP42YDR235W DRE2P36152 348 aa0.33□□□□□ -2.36
PRP42YDR235W NPT1P39683 429 aaKnown RBP0.33□□□□□ -2.36
PRP42YDR235W TIF34P40217 347 aaKnown RBP0.33□□□□□ -2.36
PRP42YDR235W OSW5P40219 148 aa0.33□□□□□ -2.36
PRP42YDR235W AGX1P43567 385 aa0.33□□□□□ -2.36
PRP42YDR235W SNX4P47057 423 aa0.33□□□□□ -2.36
PRP42YDR235W RPL4BP49626 362 aaKnown RBP0.33□□□□□ -2.36
PRP42YDR235W TIM21P53220 239 aa0.33□□□□□ -2.36
PRP42YDR235W SLX9P53251 210 aaPredicted RBP0.33□□□□□ -2.36
PRP42YDR235W PRO2P54885 456 aaKnown RBP0.33□□□□□ -2.36
PRP42YDR235W MGR3Q04472 501 aa0.33□□□□□ -2.36
PRP42YDR235W BOP2Q06150 570 aa0.33□□□□□ -2.36
PRP42YDR235W SFH1Q06168 426 aa0.33□□□□□ -2.36
PRP42YDR235W SEC10Q06245 871 aa0.33□□□□□ -2.36
Retrieved 100 of 5,963 RNA–protein pairs in 163.1 ms