RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 HELQQ8TDG4 1101 aa14.46□□□□□ -0.09
GTF3A-209ENST00000640289 CCDC47Q96A33 483 aaKnown RBP14.46□□□□□ -0.09
GTF3A-209ENST00000640289 CLSTN2Q9H4D0 955 aa14.46□□□□□ -0.09
GTF3A-209ENST00000640289 RC3H2Q9HBD1 1191 aaKnown RBP14.46□□□□□ -0.09
GTF3A-209ENST00000640289 SNTG2Q9NY99 539 aa14.46□□□□□ -0.09
GTF3A-209ENST00000640289 PTPRSQ13332 1948 aa14.46□□□□□ -0.09
GTF3A-209ENST00000640289 ZMYM2Q9UBW7 1377 aa14.46□□□□□ -0.1
GTF3A-209ENST00000640289 CEP290O15078 2479 aa14.46□□□□□ -0.1
GTF3A-209ENST00000640289 MYH11P35749 1972 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 ARHGEF15O94989 841 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 ITGA4P13612 1032 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 MATR3P43243 847 aaKnown RBP eCLIP14.45□□□□□ -0.1
GTF3A-209ENST00000640289 OSTNP61366 133 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 MCL1Q07820 350 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 NOLC1Q14978 699 aaKnown RBP eCLIP14.45□□□□□ -0.1
GTF3A-209ENST00000640289 DCAF4L1Q3SXM0 396 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 PAN2Q504Q3 1202 aaKnown RBP14.45□□□□□ -0.1
GTF3A-209ENST00000640289 HABP4Q5JVS0 413 aaKnown RBP14.45□□□□□ -0.1
GTF3A-209ENST00000640289 TMEM192Q8IY95 271 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 THNSL1Q8IYQ7 743 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 SYCP3Q8IZU3 236 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 ZNF689Q96CS4 500 aaPredicted RBP14.45□□□□□ -0.1
GTF3A-209ENST00000640289 GSDMAQ96QA5 445 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 YME1L1Q96TA2 773 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 RAD9AQ99638 391 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 NKX2-4Q9H2Z4 354 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 TMEM206Q9H813 350 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 PARP2Q9UGN5 583 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 MAN1B1Q9UKM7 699 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 EXOC7Q9UPT5 735 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 MAPK8IP1Q9UQF2 711 aa14.45□□□□□ -0.1
GTF3A-209ENST00000640289 TBKBP1A7MCY6 615 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 BIN1O00499 593 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 CLDN3O15551 220 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 CA3P07451 260 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 MCF2P10911 925 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 ADSSP30520 456 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 AFF1P51825 1210 aaKnown RBP14.44□□□□□ -0.1
GTF3A-209ENST00000640289 SMAD3P84022 425 aaKnown RBP14.44□□□□□ -0.1
GTF3A-209ENST00000640289 BMT2Q1RMZ1 405 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 PGBD4Q96DM1 585 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 LRCH3Q96II8 777 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 CASD1Q96PB1 797 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 NUP62CLQ9H1M0 184 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 CXCL16Q9H2A7 254 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 RSAD1Q9HA92 442 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 RMND1Q9NWS8 449 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 KLK14Q9P0G3 267 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 HCSTQ9UBK5 93 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 INPP5FQ9Y2H2 1132 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 INSL6Q9Y581 213 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 PCDHA11Q9Y5I1 949 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 STYXL1Q9Y6J8 313 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 COL4A6Q14031 1691 aa14.44□□□□□ -0.1
GTF3A-209ENST00000640289 UBE4BO95155 1302 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 A0A0B4J269 797 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 TGFB1I1O43294 461 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 OFD1O75665 1012 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 MBD3O95983 291 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 DNAJB2P25686 324 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 MLH1P40692 756 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 TNFSF9P41273 254 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 GRM5P41594 1212 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 RAB30Q15771 203 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 ZBTB41Q5SVQ8 909 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 SPRED2Q7Z698 418 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 ZSWIM2Q8NEG5 633 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 ZFP42Q96MM3 310 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 CBWD1Q9BRT8 395 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 MSTO1Q9BUK6 570 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 TMEM117Q9H0C3 514 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 GBP3Q9H0R5 595 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 PCIF1Q9H4Z3 704 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 RNF216Q9NWF9 866 aaPredicted RBP14.43□□□□□ -0.1
GTF3A-209ENST00000640289 KIAA1468Q9P260 1216 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 MSRAQ9UJ68 235 aa14.43□□□□□ -0.1
GTF3A-209ENST00000640289 CLIC2O15247 247 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 MEFVO15553 781 aaPredicted RBP14.42□□□□□ -0.1
GTF3A-209ENST00000640289 HOXA2O43364 376 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 FAM189A1O60320 539 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 RECQL4O94761 1208 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 BMP6P22004 513 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 BTG3Q14201 252 aaPredicted RBP14.42□□□□□ -0.1
GTF3A-209ENST00000640289 KNOP1Q1ED39 458 aaKnown RBP14.42□□□□□ -0.1
GTF3A-209ENST00000640289 ZNF658Q5TYW1 1059 aaPredicted RBP14.42□□□□□ -0.1
GTF3A-209ENST00000640289 LRRC55Q6ZSA7 311 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 APBB1IPQ7Z5R6 666 aaPredicted RBP14.42□□□□□ -0.1
GTF3A-209ENST00000640289 HACE1Q8IYU2 909 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 ABI1Q8IZP0 508 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 SP7Q8TDD2 431 aaPredicted RBP14.42□□□□□ -0.1
GTF3A-209ENST00000640289 POMGNT1Q8WZA1 660 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 SAAL1Q96ER3 474 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 GAD1Q99259 594 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 MIOSQ9NXC5 875 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 GIT1Q9Y2X7 761 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 TTC3P53804 2025 aa14.42□□□□□ -0.1
GTF3A-209ENST00000640289 LINC01553A4QN01 128 aa14.41□□□□□ -0.1
GTF3A-209ENST00000640289 ARL5CA6NH57 179 aa14.41□□□□□ -0.1
GTF3A-209ENST00000640289 OGTO15294 1046 aa14.41□□□□□ -0.1
GTF3A-209ENST00000640289 POMCP01189 267 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms