RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 FAM126AQ9BYI3 521 aaPredicted RBP11.33□□□□□ -0.6
TRIM28-210ENST00000597618 LTB4R2Q9NPC1 389 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 NAP1L2Q9ULW6 460 aaPredicted RBP11.33□□□□□ -0.6
TRIM28-210ENST00000597618 PPME1Q9Y570 386 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 IPPQ9Y573 584 aa11.33□□□□□ -0.6
TRIM28-210ENST00000597618 CEP295Q9C0D2 2601 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 DCDC2BA2VCK2 349 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 F8W810 466 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 NCAM2O15394 837 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 ERLIN2O94905 339 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 HNRNPA1P09651 372 aaKnown RBP eCLIP11.32□□□□□ -0.6
TRIM28-210ENST00000597618 SRGAP2CP0DJJ0 459 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 ADD1P35611 737 aaKnown RBP11.32□□□□□ -0.6
TRIM28-210ENST00000597618 RFC5P40937 340 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 RPS9P46781 194 aaKnown RBP11.32□□□□□ -0.6
TRIM28-210ENST00000597618 SCNN1GP51170 649 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 AKAP17AQ02040 695 aaKnown RBP11.32□□□□□ -0.6
TRIM28-210ENST00000597618 PCBP1Q15365 356 aaKnown RBP eCLIP11.32□□□□□ -0.6
TRIM28-210ENST00000597618 PLA2G4FQ68DD2 849 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 FUT10Q6P4F1 479 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 B3GNT9Q6UX72 402 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 GRASPQ7Z6J2 395 aaPredicted RBP11.32□□□□□ -0.6
TRIM28-210ENST00000597618 GLYCTKQ8IVS8 523 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 PRPF31Q8WWY3 499 aaKnown RBP11.32□□□□□ -0.6
TRIM28-210ENST00000597618 FGF13Q92913 245 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 GJA10Q969M2 543 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 CLDN23Q96B33 292 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 NELL2Q99435 816 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 MINDY3Q9H8M7 445 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 PRMT8Q9NR22 394 aaPredicted RBP11.32□□□□□ -0.6
TRIM28-210ENST00000597618 FBXW11Q9UKB1 542 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 ADAM28Q9UKQ2 775 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 MTF2Q9Y483 593 aaPredicted RBP11.32□□□□□ -0.6
TRIM28-210ENST00000597618 WDR81Q562E7 1941 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 MIA3Q5JRA6 1907 aa11.32□□□□□ -0.6
TRIM28-210ENST00000597618 PRPF3O43395 683 aaKnown RBP11.31□□□□□ -0.6
TRIM28-210ENST00000597618 EDIL3O43854 480 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 DKC1O60832 514 aaKnown RBP eCLIP11.31□□□□□ -0.6
TRIM28-210ENST00000597618 XYLBO75191 536 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 RPL17P18621 184 aaKnown RBP11.31□□□□□ -0.6
TRIM28-210ENST00000597618 TGM1P22735 817 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 AXLP30530 894 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 HOXA9P31269 272 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 FGD1P98174 961 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 NCBP1Q09161 790 aaKnown RBP11.31□□□□□ -0.6
TRIM28-210ENST00000597618 LAMTOR4Q0VGL1 99 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 NOTUMQ6P988 496 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 HACE1Q8IYU2 909 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 ZFP42Q96MM3 310 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 PHF20Q9BVI0 1012 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 C22orf23Q9BZE7 217 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 GPR62Q9BZJ7 368 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 RAB23Q9ULC3 237 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 MRPS17Q9Y2R5 130 aaKnown RBP11.31□□□□□ -0.6
TRIM28-210ENST00000597618 GIT1Q9Y2X7 761 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 ATRXP46100 2492 aa11.31□□□□□ -0.6
TRIM28-210ENST00000597618 SF3B1O75533 1304 aaKnown RBP eCLIP11.31□□□□□ -0.64e-6■■■■□ 24.4
TRIM28-210ENST00000597618 PATJQ8NI35 1801 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 NID2Q14112 1375 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 ZMYM2Q9UBW7 1377 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 CYP3A7-CYP3A51PA0A087WV96 503 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 ASAP2O43150 1006 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 TSPAN1O60635 241 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 C8AP07357 584 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 POU2F2P09086 479 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 HMGB1P09429 215 aaKnown RBP11.3□□□□□ -0.6
TRIM28-210ENST00000597618 CD72P21854 359 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 CYP3A7P24462 503 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 TARSP26639 723 aaKnown RBP11.3□□□□□ -0.6
TRIM28-210ENST00000597618 QARSP47897 775 aaKnown RBP11.3□□□□□ -0.6
TRIM28-210ENST00000597618 NTHL1P78549 312 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 KRT32Q14532 448 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 PPM1LQ5SGD2 360 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 ZNF852Q6ZMS4 543 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 TPRG1Q6ZUI0 275 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 RNF149Q8NC42 400 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 ETNPPLQ8TBG4 499 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 NETO1Q8TDF5 533 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 TBCKQ8TEA7 893 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 TCP11Q8WWU5 503 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 TMEM143Q96AN5 459 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 CEP170P1Q96L14 293 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 EIF2AQ9BY44 585 aaKnown RBP11.3□□□□□ -0.6
TRIM28-210ENST00000597618 TRIM6Q9C030 488 aaPredicted RBP11.3□□□□□ -0.6
TRIM28-210ENST00000597618 RNF39Q9H2S5 420 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 DHX33Q9H6R0 707 aaKnown RBP11.3□□□□□ -0.6
TRIM28-210ENST00000597618 PARD6AQ9NPB6 346 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 HES2Q9Y543 173 aa11.3□□□□□ -0.6
TRIM28-210ENST00000597618 SLC30A4O14863 429 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 CCL16O15467 120 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 LRP3O75074 770 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 TADA2AO75478 443 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 TDP2O95551 362 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 NRLP54845 237 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 NPEPPSP55786 919 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 GRIK3Q13003 919 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 PPP2R5DQ14738 602 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 EMC2Q15006 297 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 TSGA10IPQ3SY00 556 aa11.29□□□□□ -0.6
TRIM28-210ENST00000597618 PPM1JQ5JR12 505 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms