RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 HES2Q9Y543 173 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 BRWD1Q9NSI6 2320 aa13.07□□□□□ -0.32
LIG3-213ENST00000590630 ARL5CA6NH57 179 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 MLH1P40692 756 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 ALDH7A1P49419 539 aaKnown RBP13.06□□□□□ -0.32
LIG3-213ENST00000590630 EEF1DP3Q658K8 133 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 KCNT2Q6UVM3 1135 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 ZPBP2Q6X784 338 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 THNSL1Q8IYQ7 743 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 KLHL23Q8NBE8 558 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 ZNF558Q96NG5 402 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 FIZ1Q96SL8 496 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 TARS2Q9BW92 718 aaKnown RBP13.06□□□□□ -0.32
LIG3-213ENST00000590630 APOL6Q9BWW8 343 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 RNF39Q9H2S5 420 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 ST6GALNAC4Q9H4F1 302 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 PTPRHQ9HD43 1115 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 USP20Q9Y2K6 914 aa13.06□□□□□ -0.32
LIG3-213ENST00000590630 FRMD3A2A2Y4 597 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 GRM6O15303 877 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 ZC3H11AO75152 810 aaKnown RBP eCLIP13.05□□□□□ -0.32
LIG3-213ENST00000590630 TOM1L1O75674 476 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 FGF18O76093 207 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 ITGB1P05556 798 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 IDEP14735 1019 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 PROZP22891 400 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 AKAP5P24588 427 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 GTF2BQ00403 316 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 UBE3AQ05086 875 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 ZNF568Q3ZCX4 644 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 TIGD5Q53EQ6 642 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 CNNM4Q6P4Q7 775 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 MPZL3Q6UWV2 235 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 SFR1Q86XK3 245 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 ZFP42Q96MM3 310 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 GAD1Q99259 594 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 TRIM9Q9C026 710 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 ALG13Q9NP73 1137 aaKnown RBP13.05□□□□□ -0.32
LIG3-213ENST00000590630 OLFML3Q9NRN5 406 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 PARP2Q9UGN5 583 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 USP25Q9UHP3 1055 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 TBX20Q9UMR3 447 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 LZTS1Q9Y250 596 aa13.05□□□□□ -0.32
LIG3-213ENST00000590630 PDCD11Q14690 1871 aaKnown RBP13.04□□□□□ -0.32
LIG3-213ENST00000590630 A0A1W2PQ27 194 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 A0A1W2PQ64 194 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 A0A1W2PQD8 194 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 ABLIM1O14639 778 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 HNRNPDLO14979 420 aaKnown RBP13.04□□□□□ -0.32
LIG3-213ENST00000590630 RECQL4O94761 1208 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 POMCP01189 267 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 PIGRP01833 764 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 SLFN14P0C7P3 912 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 MCF2P10911 925 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 PFKFB1P16118 471 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 NMT1P30419 496 aaKnown RBP13.04□□□□□ -0.32
LIG3-213ENST00000590630 AFF1P51825 1210 aaKnown RBP13.04□□□□□ -0.32
LIG3-213ENST00000590630 BCAR1P56945 870 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 PLCB3Q01970 1234 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 KRT17Q04695 432 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 NOLC1Q14978 699 aaKnown RBP eCLIP13.04□□□□□ -0.32
LIG3-213ENST00000590630 HERC4Q5GLZ8 1057 aaPredicted RBP13.04□□□□□ -0.32
LIG3-213ENST00000590630 ZNF720Q7Z2F6 126 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 CCDC65Q8IXS2 484 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 CEP57L1Q8IYX8 460 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 MICALL1Q8N3F8 863 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 SPPL3Q8TCT6 385 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 HVCN1Q96D96 273 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 BICD1Q96G01 975 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 FAM193BQ96PV7 902 aaPredicted RBP13.04□□□□□ -0.32
LIG3-213ENST00000590630 RPS6KC1Q96S38 1066 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 TMEM175Q9BSA9 504 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 TCHPQ9BT92 498 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 CDT1Q9H211 546 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 NRDE2Q9H7Z3 1164 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 MRPL44Q9H9J2 332 aaKnown RBP13.04□□□□□ -0.32
LIG3-213ENST00000590630 PANK4Q9NVE7 773 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 SNTG2Q9NY99 539 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 SPG21Q9NZD8 308 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 HPSEQ9Y251 543 aa13.04□□□□□ -0.32
LIG3-213ENST00000590630 FAM237AA0A1B0GTK4 181 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 A0A1B0GVL5 298 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 CLDN3O15551 220 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 PPP1R37O75864 691 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 PBX3P40426 434 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 GRM5P41594 1212 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 LIG4P49917 911 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 SCNN1GP51170 649 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 DSC1Q08554 894 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 GRIK3Q13003 919 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 ALCAMQ13740 583 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 CCDC85BQ15834 202 aaPredicted RBP13.03□□□□□ -0.32
LIG3-213ENST00000590630 ZNF280BQ86YH2 543 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 MAP4K3Q8IVH8 894 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 SLC39A11Q8N1S5 342 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 GSTCDQ8NEC7 633 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 POF1BQ8WVV4 589 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 MRPS27Q92552 414 aaKnown RBP13.03□□□□□ -0.32
LIG3-213ENST00000590630 STAMQ92783 540 aa13.03□□□□□ -0.32
LIG3-213ENST00000590630 C7orf25Q9BPX7 421 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms