RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 FAM189A1O60320 539 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 GJA8P48165 433 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 KLK7P49862 253 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 CDC42EP1Q00587 391 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 UBXN1Q04323 297 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 C1orf220Q5T0J3 134 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 ZNF618Q5T7W0 954 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 TMEM192Q8IY95 271 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 GPD1LQ8N335 351 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 PPP1R9BQ96SB3 815 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 MKNK1Q9BUB5 465 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 CDT1Q9H211 546 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 TNFSF13BQ9Y275 285 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 CBFA2T2O43439 604 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 OSTNP61366 133 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 MCL1Q07820 350 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 RPAINQ86UA6 219 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 FAM228AQ86W67 206 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 SLC35C1Q96A29 364 aa27.37■■□□□ 1.97
SHMT1-207ENST00000580002 POP1Q99575 1024 aaKnown RBP27.37■■□□□ 1.97
SHMT1-207ENST00000580002 UTP18Q9Y5J1 556 aaKnown RBP eCLIP27.37■■□□□ 1.97
SHMT1-207ENST00000580002 ERLIN2O94905 339 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 PBX1P40424 430 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 KCNH2Q12809 1159 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 ZNF568Q3ZCX4 644 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 FILIP1LQ4L180 1135 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 TCERG1LQ5VWI1 586 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 SLFN12LQ6IEE8 588 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 MPZL3Q6UWV2 235 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 TMC6Q7Z403 805 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 RSPH3Q86UC2 560 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 FAM126BQ8IXS8 530 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 THNSL1Q8IYQ7 743 aa27.36■■□□□ 1.97
SHMT1-207ENST00000580002 EXTL3O43909 919 aa27.35■■□□□ 1.97
SHMT1-207ENST00000580002 VSTM4Q8IW00 320 aa27.35■■□□□ 1.97
SHMT1-207ENST00000580002 DRC7Q8IY82 874 aa27.35■■□□□ 1.97
SHMT1-207ENST00000580002 PRIMPOLQ96LW4 560 aa27.35■■□□□ 1.97
SHMT1-207ENST00000580002 MMRN2Q9H8L6 949 aa27.35■■□□□ 1.97
SHMT1-207ENST00000580002 AGO3Q9H9G7 860 aaKnown RBP27.35■■□□□ 1.97
SHMT1-207ENST00000580002 A0A1B0GUA9 196 aa27.35■■□□□ 1.97
SHMT1-207ENST00000580002 TRAF7Q6Q0C0 670 aa27.35■■□□□ 1.97
SHMT1-207ENST00000580002 SLC39A5Q6ZMH5 540 aa27.35■■□□□ 1.97
SHMT1-207ENST00000580002 CCDC127Q96BQ5 260 aa27.35■■□□□ 1.97
SHMT1-207ENST00000580002 METTL14Q9HCE5 456 aaKnown RBP27.35■■□□□ 1.97
SHMT1-207ENST00000580002 TOPORSQ9NS56 1045 aaPredicted RBP27.35■■□□□ 1.97
SHMT1-207ENST00000580002 PQBP1O60828 265 aaKnown RBP27.34■■□□□ 1.97
SHMT1-207ENST00000580002 CKBP12277 381 aa27.34■■□□□ 1.97
SHMT1-207ENST00000580002 CDC25BP30305 580 aa27.34■■□□□ 1.97
SHMT1-207ENST00000580002 CCDC173Q0VFZ6 552 aa27.34■■□□□ 1.97
SHMT1-207ENST00000580002 BFSP1Q12934 665 aa27.34■■□□□ 1.97
SHMT1-207ENST00000580002 NOLC1Q14978 699 aaKnown RBP eCLIP27.34■■□□□ 1.97
SHMT1-207ENST00000580002 MFSD14AQ96MC6 490 aa27.34■■□□□ 1.97
SHMT1-207ENST00000580002 EIF2AQ9BY44 585 aaKnown RBP27.34■■□□□ 1.97
SHMT1-207ENST00000580002 M0QZ92 97 aa27.33■■□□□ 1.97
SHMT1-207ENST00000580002 MEFVO15553 781 aaPredicted RBP27.33■■□□□ 1.97
SHMT1-207ENST00000580002 CD4P01730 458 aa27.33■■□□□ 1.97
SHMT1-207ENST00000580002 COL6A1P12109 1028 aa27.33■■□□□ 1.97
SHMT1-207ENST00000580002 VAMP7P51809 220 aa27.33■■□□□ 1.97
SHMT1-207ENST00000580002 CYP24A1Q07973 514 aa27.33■■□□□ 1.97
SHMT1-207ENST00000580002 GOLGA8FQ08AF8 430 aa27.33■■□□□ 1.97
SHMT1-207ENST00000580002 GOLGA8DPQ0D2H9 430 aa27.33■■□□□ 1.97
SHMT1-207ENST00000580002 CRACR2AQ9BSW2 395 aa27.33■■□□□ 1.97
SHMT1-207ENST00000580002 PRDM10Q9NQV6 1147 aa27.33■■□□□ 1.97
SHMT1-207ENST00000580002 GHRP10912 638 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 APBA1Q02410 837 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 PPP3CAQ08209 521 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 LMBRD2Q68DH5 695 aaPredicted RBP27.32■■□□□ 1.96
SHMT1-207ENST00000580002 PAWRQ96IZ0 340 aaKnown RBP27.32■■□□□ 1.96
SHMT1-207ENST00000580002 PCDH10Q9P2E7 1040 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 ST3GAL5Q9UNP4 418 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 ZNF233A6NK53 670 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 KCNMA1Q12791 1236 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 MBTPS1Q14703 1052 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 ARID5BQ14865 1188 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 CBWD6Q4V339 395 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 CBWD3Q5JTY5 395 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 CBWD5Q5RIA9 395 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 PARD3BQ8TEW8 1205 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 PDE11AQ9HCR9 933 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 AGPAT5Q9NUQ2 364 aa27.32■■□□□ 1.96
SHMT1-207ENST00000580002 PIN4Q9Y237 131 aaKnown RBP27.32■■□□□ 1.96
SHMT1-207ENST00000580002 LRRIQ3A6PVS8 624 aaPredicted RBP27.31■■□□□ 1.96
SHMT1-207ENST00000580002 OGTO15294 1046 aa27.31■■□□□ 1.96
SHMT1-207ENST00000580002 LRRN2O75325 713 aa27.31■■□□□ 1.96
SHMT1-207ENST00000580002 NPTXRO95502 500 aa27.31■■□□□ 1.96
SHMT1-207ENST00000580002 SFPQP23246 707 aaKnown RBP eCLIP27.31■■□□□ 1.96
SHMT1-207ENST00000580002 NFX1Q12986 1120 aaKnown RBP27.31■■□□□ 1.96
SHMT1-207ENST00000580002 SYCP1Q15431 976 aa27.31■■□□□ 1.96
SHMT1-207ENST00000580002 FBXO47Q5MNV8 452 aa27.31■■□□□ 1.96
SHMT1-207ENST00000580002 ARHGAP30Q7Z6I6 1101 aaPredicted RBP27.31■■□□□ 1.96
SHMT1-207ENST00000580002 MAPK13O15264 365 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 RPS6KA5O75582 802 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 AFPP02771 609 aaKnown RBP27.3■■□□□ 1.96
SHMT1-207ENST00000580002 CD52P31358 61 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 LPIN1Q14693 890 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 TRIM60Q495X7 471 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 FAM26DQ5JW98 314 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 SCARA3Q6AZY7 606 aa27.3■■□□□ 1.96
SHMT1-207ENST00000580002 INTS8Q75QN2 995 aaKnown RBP27.3■■□□□ 1.96
SHMT1-207ENST00000580002 TMEM130Q8N3G9 435 aa27.3■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms