RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 RASIP1Q5U651 963 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 ARMCX5Q6P1M9 558 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 ECHDC2Q86YB7 292 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 C12orf56Q8IXR9 622 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 ZBTB45Q96K62 511 aaPredicted RBP18.67■□□□□ 0.58
NUP88-210ENST00000574867 SLC9A7Q96T83 725 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 IKZF4Q9H2S9 585 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 IPPQ9Y573 584 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 TISP43B9A030 160 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 EOMESO95936 686 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 STAG3L1P0CL83 205 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 HSP90AA2PQ14568 343 aaPredicted RBP18.67■□□□□ 0.58
NUP88-210ENST00000574867 KYAT1Q16773 422 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.67■□□□□ 0.58
NUP88-210ENST00000574867 ZBTB33Q86T24 672 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 NPAS4Q8IUM7 802 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 PGBD4Q96DM1 585 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 RNPC3Q96LT9 517 aaKnown RBP18.67■□□□□ 0.58
NUP88-210ENST00000574867 MSTO1Q9BUK6 570 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 TRAF3IP3Q9Y228 551 aa18.67■□□□□ 0.58
NUP88-210ENST00000574867 CALUO43852 315 aaPredicted RBP18.66■□□□□ 0.58
NUP88-210ENST00000574867 ADSSP30520 456 aa18.66■□□□□ 0.58
NUP88-210ENST00000574867 MRPL10Q7Z7H8 261 aaKnown RBP18.66■□□□□ 0.58
NUP88-210ENST00000574867 ZNF598Q86UK7 904 aaKnown RBP18.66■□□□□ 0.58
NUP88-210ENST00000574867 TMEM174Q8WUU8 243 aa18.66■□□□□ 0.58
NUP88-210ENST00000574867 NXF3Q9H4D5 531 aaKnown RBP18.66■□□□□ 0.58
NUP88-210ENST00000574867 CXXC1Q9P0U4 656 aaPredicted RBP18.66■□□□□ 0.58
NUP88-210ENST00000574867 LRFN2Q9ULH4 789 aa18.66■□□□□ 0.58
NUP88-210ENST00000574867 SLC4A7Q9Y6M7 1214 aa18.66■□□□□ 0.58
NUP88-210ENST00000574867 PPP1R3GB7ZBB8 358 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 OGTO15294 1046 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 HARSP12081 509 aaKnown RBP18.65■□□□□ 0.58
NUP88-210ENST00000574867 CD44P16070 742 aaKnown RBP18.65■□□□□ 0.58
NUP88-210ENST00000574867 GRM5P41594 1212 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 DEFB103AP81534 67 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 LRRC63Q05C16 580 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 STX1AQ16623 288 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 DPCR1Q3MIW9 517 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 ZCWPW2Q504Y3 356 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 C9orf50Q5SZB4 431 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 CENPPQ6IPU0 288 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 FOXR2Q6PJQ5 311 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 SMG8Q8ND04 991 aaKnown RBP18.65■□□□□ 0.58
NUP88-210ENST00000574867 PHOSPHO2Q8TCD6 241 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 RSPH1Q8WYR4 309 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 TSG101Q99816 390 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 HAPLN2Q9GZV7 340 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 ANO10Q9NW15 660 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 AGO2Q9UKV8 859 aaKnown RBP18.65■□□□□ 0.58
NUP88-210ENST00000574867 PCDHB7Q9Y5E2 793 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 PTPRSQ13332 1948 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 BICDL2A1A5D9 508 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 HOXA2O43364 376 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 LDHAP00338 332 aaKnown RBP18.65■□□□□ 0.58
NUP88-210ENST00000574867 ATF7P17544 494 aaPredicted RBP18.65■□□□□ 0.58
NUP88-210ENST00000574867 PAK1Q13153 545 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 SHHQ15465 462 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 NFIL3Q16649 462 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 EDRF1Q3B7T1 1238 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 CT47A1Q5JQC4 288 aaPredicted RBP18.65■□□□□ 0.58
NUP88-210ENST00000574867 CRIPAKQ8N1N5 446 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 P2RX5Q93086 422 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 TOP1MTQ969P6 601 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 CBWD1Q9BRT8 395 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 CCDC94Q9BW85 323 aaPredicted RBP18.65■□□□□ 0.58
NUP88-210ENST00000574867 UBN1Q9NPG3 1134 aa18.65■□□□□ 0.58
NUP88-210ENST00000574867 ITGA4P13612 1032 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 CCNE1P24864 410 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 MYBPC2Q14324 1141 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 KLHL10Q6JEL2 608 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 SLC9A9Q8IVB4 645 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 SEMA6BQ9H3T3 888 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 FAM189A1O60320 539 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 ZSCAN23Q3MJ62 389 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 THNSL1Q8IYQ7 743 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 RNF169Q8NCN4 708 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 NELFBQ8WX92 580 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 KIAA1586Q9HCI6 787 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 HSPBP1Q9NZL4 362 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 CTNND2Q9UQB3 1225 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 HES2Q9Y543 173 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 RALGAPA2Q2PPJ7 1873 aa18.64■□□□□ 0.57
NUP88-210ENST00000574867 SYCE3A1L190 88 aa18.63■□□□□ 0.57
NUP88-210ENST00000574867 CLIC2O15247 247 aa18.63■□□□□ 0.57
NUP88-210ENST00000574867 NR3C1P04150 777 aa18.63■□□□□ 0.57
NUP88-210ENST00000574867 CLTAP09496 248 aa18.63■□□□□ 0.57
NUP88-210ENST00000574867 CCDC192P0DO97 292 aa18.63■□□□□ 0.57
NUP88-210ENST00000574867 ATP2A2P16615 1042 aaKnown RBP18.63■□□□□ 0.57
NUP88-210ENST00000574867 RPL13P26373 211 aaKnown RBP18.63■□□□□ 0.57
NUP88-210ENST00000574867 YARSP54577 528 aaKnown RBP18.63■□□□□ 0.57
NUP88-210ENST00000574867 POU5F1Q01860 360 aaKnown RBP18.63■□□□□ 0.57
NUP88-210ENST00000574867 TYRO3Q06418 890 aa18.63■□□□□ 0.57
NUP88-210ENST00000574867 TDHQ8IZJ6 230 aa18.63■□□□□ 0.57
NUP88-210ENST00000574867 GPD1LQ8N335 351 aa18.63■□□□□ 0.57
NUP88-210ENST00000574867 CEP120Q8N960 986 aa18.63■□□□□ 0.57
NUP88-210ENST00000574867 TOPORSQ9NS56 1045 aaPredicted RBP18.63■□□□□ 0.57
NUP88-210ENST00000574867 EXTL3O43909 919 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 IBSPP21815 317 aaPredicted RBP18.62■□□□□ 0.57
NUP88-210ENST00000574867 CHRDL2Q6WN34 429 aa18.62■□□□□ 0.57
NUP88-210ENST00000574867 XXYLT1Q8NBI6 393 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms