RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 AGMOQ6ZNB7 445 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 ELSPBP1Q96BH3 223 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 LRIG1Q96JA1 1093 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 UBAC1Q9BSL1 405 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 MKNK1Q9BUB5 465 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 HCFC1R1Q9NWW0 138 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 KCNH3Q9ULD8 1083 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 POLIQ9UNA4 740 aa12.71□□□□□ -0.37
CDH3-208ENST00000569036 SPTA1P02549 2419 aa12.71□□□□□ -0.38
CDH3-208ENST00000569036 ZNF213O14771 459 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 XYLBO75191 536 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 C1QL1O75973 258 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 POMCP01189 267 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 C8AP07357 584 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 FCARP24071 287 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 HOXA9P31269 272 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 FGD1P98174 961 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 LRRC32Q14392 662 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 SEC23AQ15436 765 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 WDR44Q5JSH3 913 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 LIN9Q5TKA1 542 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 POTEHQ6S545 545 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 TRMT1LQ7Z2T5 733 aaKnown RBP12.7□□□□□ -0.38
CDH3-208ENST00000569036 CKAP2LQ8IYA6 745 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 OTUD7AQ8TE49 926 aaPredicted RBP12.7□□□□□ -0.38
CDH3-208ENST00000569036 HNRNPLLQ8WVV9 542 aaKnown RBP12.7□□□□□ -0.38
CDH3-208ENST00000569036 NLRP7Q8WX94 980 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 MCRS1Q96EZ8 462 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 MXRA8Q9BRK3 442 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 DDX19BQ9UMR2 479 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 PIN4Q9Y237 131 aaKnown RBP12.7□□□□□ -0.38
CDH3-208ENST00000569036 NUP205Q92621 2012 aa12.7□□□□□ -0.38
CDH3-208ENST00000569036 USP9XQ93008 2570 aaPredicted RBP12.7□□□□□ -0.38
CDH3-208ENST00000569036 FAM221BA6H8Z2 402 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 DDX39AO00148 427 aaKnown RBP12.69□□□□□ -0.38
CDH3-208ENST00000569036 MAGEB2O15479 319 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 CCDC192P0DO97 292 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 CCNE1P24864 410 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 TMOD1P28289 359 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 OR1G1P47890 313 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 UBE2SQ16763 222 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 PABPC1LQ4VXU2 614 aaKnown RBP12.69□□□□□ -0.38
CDH3-208ENST00000569036 SWSAP1Q6NVH7 229 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 MAP4K3Q8IVH8 894 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 COLGALT2Q8IYK4 626 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 GPR65Q8IYL9 337 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 PGBD4Q96DM1 585 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 ZC3H10Q96K80 434 aaKnown RBP12.69□□□□□ -0.38
CDH3-208ENST00000569036 RSAD1Q9HA92 442 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 AGO4Q9HCK5 861 aaKnown RBP12.69□□□□□ -0.38
CDH3-208ENST00000569036 ZNF334Q9HCZ1 680 aaPredicted RBP12.69□□□□□ -0.38
CDH3-208ENST00000569036 TMEM9BQ9NQ34 198 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 TRPV5Q9NQA5 729 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 GDE1Q9NZC3 331 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 KANSL3Q9P2N6 904 aa12.69□□□□□ -0.38
CDH3-208ENST00000569036 TDRD15B5MCY1 1934 aaKnown RBP12.68□□□□□ -0.38
CDH3-208ENST00000569036 POU2F2P09086 479 aa12.68□□□□□ -0.38
CDH3-208ENST00000569036 KIF5BP33176 963 aa12.68□□□□□ -0.38
CDH3-208ENST00000569036 PXNP49023 591 aaPredicted RBP12.68□□□□□ -0.38
CDH3-208ENST00000569036 CREMQ03060 361 aa12.68□□□□□ -0.38
CDH3-208ENST00000569036 SCAPQ12770 1279 aa12.68□□□□□ -0.38
CDH3-208ENST00000569036 IRF7Q92985 503 aa12.68□□□□□ -0.38
CDH3-208ENST00000569036 HNRNPABQ99729 332 aaKnown RBP12.68□□□□□ -0.38
CDH3-208ENST00000569036 TRMT61BQ9BVS5 477 aaKnown RBP12.68□□□□□ -0.38
CDH3-208ENST00000569036 BACH2Q9BYV9 841 aa12.68□□□□□ -0.38
CDH3-208ENST00000569036 GPR62Q9BZJ7 368 aa12.68□□□□□ -0.38
CDH3-208ENST00000569036 LY9Q9HBG7 655 aa12.68□□□□□ -0.38
CDH3-208ENST00000569036 DNMT3BQ9UBC3 853 aaKnown RBP12.68□□□□□ -0.38
CDH3-208ENST00000569036 RCAN3Q9UKA8 241 aa12.68□□□□□ -0.38
CDH3-208ENST00000569036 CEP131Q9UPN4 1083 aa12.68□□□□□ -0.38
CDH3-208ENST00000569036 MRPS23Q9Y3D9 190 aaKnown RBP12.68□□□□□ -0.38
CDH3-208ENST00000569036 PCDHB2Q9Y5E7 798 aa12.68□□□□□ -0.38
CDH3-208ENST00000569036 SHROOM3Q8TF72 1996 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 NRG2O14511 850 aaPredicted RBP12.67□□□□□ -0.38
CDH3-208ENST00000569036 CDX4O14627 284 aaPredicted RBP12.67□□□□□ -0.38
CDH3-208ENST00000569036 AKAP3O75969 853 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 CAVIN2O95810 425 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 CEBPBP17676 345 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 SFPQP23246 707 aaKnown RBP eCLIP12.67□□□□□ -0.38
CDH3-208ENST00000569036 SLC5A9Q2M3M2 681 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 USP41Q3LFD5 358 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 PLK5Q496M5 336 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 MIS18BP1Q6P0N0 1132 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 PRSS55Q6UWB4 352 aaPredicted RBP12.67□□□□□ -0.38
CDH3-208ENST00000569036 GCOM2Q9BZD3 368 aaPredicted RBP12.67□□□□□ -0.38
CDH3-208ENST00000569036 PSTPIP2Q9H939 334 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 SCUBE2Q9NQ36 999 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 PCDHA6Q9UN73 950 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 PCDHA8Q9Y5H6 950 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 RAI2Q9Y5P3 530 aa12.67□□□□□ -0.38
CDH3-208ENST00000569036 MAFBQ9Y5Q3 323 aaPredicted RBP12.67□□□□□ -0.38
CDH3-208ENST00000569036 CNTNAP2Q9UHC6 1331 aa12.66□□□□□ -0.38
CDH3-208ENST00000569036 SPAARA0A1B0GVQ0 90 aa12.66□□□□□ -0.38
CDH3-208ENST00000569036 SPDYE3A6NKU9 549 aa12.66□□□□□ -0.38
CDH3-208ENST00000569036 GDI1P31150 447 aa12.66□□□□□ -0.38
CDH3-208ENST00000569036 CREB5Q02930 508 aa12.66□□□□□ -0.38
CDH3-208ENST00000569036 DSC1Q08554 894 aa12.66□□□□□ -0.38
CDH3-208ENST00000569036 NMIQ13287 307 aaPredicted RBP12.66□□□□□ -0.38
CDH3-208ENST00000569036 FUT10Q6P4F1 479 aa12.66□□□□□ -0.38
CDH3-208ENST00000569036 MRPL10Q7Z7H8 261 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms