RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 STK39Q9UEW8 545 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 CDH22Q9UJ99 828 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 SMC3Q9UQE7 1217 aa16.43■□□□□ 0.22
CLN3-213ENST00000565047 FAM86C2PA6NEL3 165 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 DCXO43602 365 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 SOD2P04179 222 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 PRKCBP05771 671 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 EPCAMP16422 314 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 MAPK6Q16659 721 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 KIAA0319Q5VV43 1072 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 ARL6IP4Q66PJ3 421 aaKnown RBP16.42■□□□□ 0.22
CLN3-213ENST00000565047 TAS1R3Q7RTX0 852 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 LRRC15Q8TF66 581 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 CASP10Q92851 521 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 KLHL5Q96PQ7 755 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 NTPCRQ9BSD7 190 aaKnown RBP16.42■□□□□ 0.22
CLN3-213ENST00000565047 RUSC1Q9BVN2 902 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 APOL6Q9BWW8 343 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 TRIM6Q9C030 488 aaPredicted RBP16.42■□□□□ 0.22
CLN3-213ENST00000565047 ADAM7Q9H2U9 754 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 CHST7Q9NS84 486 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 KLK14Q9P0G3 267 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 DNM3Q9UQ16 869 aa16.42■□□□□ 0.22
CLN3-213ENST00000565047 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.42■□□□□ 0.22
CLN3-213ENST00000565047 H3BQV1 296 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 PTGESO14684 152 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 N4BP3O15049 544 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 CNPP09543 421 aaKnown RBP16.41■□□□□ 0.22
CLN3-213ENST00000565047 OR1G1P47890 313 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 NPTX2P47972 431 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 PRPF4BQ13523 1007 aaKnown RBP16.41■□□□□ 0.22
CLN3-213ENST00000565047 PPP2R5AQ15172 486 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 LARP1BQ659C4 914 aaKnown RBP16.41■□□□□ 0.22
CLN3-213ENST00000565047 KANK3Q6NY19 840 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 KCTD17Q8N5Z5 321 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 DEPTORQ8TB45 409 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 FAM193BQ96PV7 902 aaPredicted RBP16.41■□□□□ 0.22
CLN3-213ENST00000565047 HERC2P3Q9BVR0 1158 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 PTPRHQ9HD43 1115 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 SNTG2Q9NY99 539 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 ARHGAP28Q9P2N2 729 aa16.41■□□□□ 0.22
CLN3-213ENST00000565047 PRG3Q9Y2Y8 225 aaPredicted RBP16.41■□□□□ 0.22
CLN3-213ENST00000565047 PRR33A8MZF0 331 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 HIP1RO75146 1068 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 SRGAP2BP0DMP2 458 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 GUCY2CP25092 1073 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 CLCN4P51793 760 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 EFNA5P52803 228 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 SLC12A3P55017 1021 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 ITIH3Q06033 890 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 GRIK3Q13003 919 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 BMS1Q14692 1282 aaKnown RBP16.4■□□□□ 0.22
CLN3-213ENST00000565047 TMEM119Q4V9L6 283 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 HACE1Q8IYU2 909 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 RPS6KC1Q96S38 1066 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 PAAF1Q9BRP4 392 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 APOL5Q9BWW9 433 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 GPR62Q9BZJ7 368 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 TMEM134Q9H6X4 195 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 RXFP1Q9HBX9 757 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 DAXXQ9UER7 740 aaPredicted RBP16.4■□□□□ 0.22
CLN3-213ENST00000565047 MUTYHQ9UIF7 546 aa16.4■□□□□ 0.22
CLN3-213ENST00000565047 VWA3AA6NCI4 1184 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 ABLIM1O14639 778 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 PAPLNO95428 1278 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 PEX3P56589 373 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 DSG1Q02413 1049 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 GRIN1Q05586 938 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 TPRNQ4KMQ1 711 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 ARSHQ5FYA8 562 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 C12orf76Q8N812 135 aaPredicted RBP16.39■□□□□ 0.21
CLN3-213ENST00000565047 SYT2Q8N9I0 419 aaPredicted RBP16.39■□□□□ 0.21
CLN3-213ENST00000565047 IFT74Q96LB3 600 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 C17orf75Q9HAS0 396 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 CACNG4Q9UBN1 327 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 PARP2Q9UGN5 583 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 TNFSF13BQ9Y275 285 aa16.39■□□□□ 0.21
CLN3-213ENST00000565047 TDRD15B5MCY1 1934 aaKnown RBP16.39■□□□□ 0.21
CLN3-213ENST00000565047 K7ERI5 159 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 RECQL4O94761 1208 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 SSBP05455 408 aaKnown RBP eCLIP16.38■□□□□ 0.21
CLN3-213ENST00000565047 PROZP22891 400 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 XKR4Q5GH76 650 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 ATF7IP2Q5U623 682 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 ALKAL1Q6UXT8 129 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 PPFIBP1Q86W92 1011 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 GPR65Q8IYL9 337 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 RABGGTAQ92696 567 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 EDAQ92838 391 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 KCNN1Q92952 543 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 RPGRIP1Q96KN7 1286 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 AK8Q96MA6 479 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 ACO2Q99798 780 aaKnown RBP16.38■□□□□ 0.21
CLN3-213ENST00000565047 TIPINQ9BVW5 301 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 COLEC11Q9BWP8 271 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 POMKQ9H5K3 350 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 MRPL17Q9NRX2 175 aaKnown RBP16.38■□□□□ 0.21
CLN3-213ENST00000565047 DZANK1Q9NVP4 752 aa16.38■□□□□ 0.21
CLN3-213ENST00000565047 SFI1A8K8P3 1242 aa16.37■□□□□ 0.21
CLN3-213ENST00000565047 TEX28O15482 410 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms