RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 FUT10Q6P4F1 479 aa20.68■□□□□ 0.9
TPM1-226ENST00000560959 RSPO2Q6UXX9 243 aaPredicted RBP20.68■□□□□ 0.9
TPM1-226ENST00000560959 GET4Q7L5D6 327 aaPredicted RBP20.68■□□□□ 0.9
TPM1-226ENST00000560959 OTUD6AQ7L8S5 288 aa20.68■□□□□ 0.9
TPM1-226ENST00000560959 HACE1Q8IYU2 909 aa20.68■□□□□ 0.9
TPM1-226ENST00000560959 BLIDQ8IZY5 108 aa20.68■□□□□ 0.9
TPM1-226ENST00000560959 DCLK2Q8N568 766 aa20.68■□□□□ 0.9
TPM1-226ENST00000560959 ZNF579Q8NAF0 562 aaKnown RBP20.68■□□□□ 0.9
TPM1-226ENST00000560959 DAGLBQ8NCG7 672 aa20.68■□□□□ 0.9
TPM1-226ENST00000560959 GPR62Q9BZJ7 368 aa20.68■□□□□ 0.9
TPM1-226ENST00000560959 DDX25Q9UHL0 483 aaKnown RBP20.68■□□□□ 0.9
TPM1-226ENST00000560959 FANCMQ8IYD8 2048 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 KANSL1LA0AUZ9 987 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 TSPAN1O60635 241 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 HNRNPA1P09651 372 aaKnown RBP eCLIP20.67■□□□□ 0.9
TPM1-226ENST00000560959 MYBP10242 640 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 CPA1P15085 419 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 FSHRP23945 695 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 SCNN1GP51170 649 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 PTENP60484 403 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 GPC5P78333 572 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 MXD4Q14582 209 aaPredicted RBP20.67■□□□□ 0.9
TPM1-226ENST00000560959 BLOC1S2Q6QNY1 142 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 IFNLR1Q8IU57 520 aaPredicted RBP20.67■□□□□ 0.9
TPM1-226ENST00000560959 TRIM22Q8IYM9 498 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 EIF2AQ9BY44 585 aaKnown RBP20.67■□□□□ 0.9
TPM1-226ENST00000560959 BCO2Q9BYV7 579 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 FOXQ1Q9C009 403 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 ADAM28Q9UKQ2 775 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 VAV3Q9UKW4 847 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 CDH7Q9ULB5 785 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 ZMYM2Q9UBW7 1377 aa20.67■□□□□ 0.9
TPM1-226ENST00000560959 POTEMA6NI47 508 aa20.66■□□□□ 0.9
TPM1-226ENST00000560959 PDIA3P30101 505 aaKnown RBP20.66■□□□□ 0.9
TPM1-226ENST00000560959 RSPO4Q2I0M5 234 aaPredicted RBP20.66■□□□□ 0.9
TPM1-226ENST00000560959 VARS2Q5ST30 1063 aaKnown RBP20.66■□□□□ 0.9
TPM1-226ENST00000560959 MTSS1LQ765P7 747 aa20.66■□□□□ 0.9
TPM1-226ENST00000560959 GSTCDQ8NEC7 633 aa20.66■□□□□ 0.9
TPM1-226ENST00000560959 ZFP42Q96MM3 310 aa20.66■□□□□ 0.9
TPM1-226ENST00000560959 JAKMIP1Q96N16 626 aaKnown RBP20.66■□□□□ 0.9
TPM1-226ENST00000560959 RPP25Q9BUL9 199 aaKnown RBP20.66■□□□□ 0.9
TPM1-226ENST00000560959 KCNMB3Q9NPA1 279 aa20.66■□□□□ 0.9
TPM1-226ENST00000560959 PCDHGA2Q9Y5H1 932 aa20.66■□□□□ 0.9
TPM1-226ENST00000560959 CEP250Q9BV73 2442 aa20.66■□□□□ 0.9
TPM1-226ENST00000560959 NCOR2Q9Y618 2525 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 F8W810 466 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 LAMTOR5O43504 91 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 RPS6KB1P23443 525 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 HOXA9P31269 272 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 YWHABP31946 246 aaKnown RBP20.65■□□□□ 0.9
TPM1-226ENST00000560959 PFKPQ01813 784 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 EMC2Q15006 297 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 EPHA7Q15375 998 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 SLC44A4Q53GD3 710 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 PPP4R3AQ6IN85 833 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 PARM1Q6UWI2 310 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 FGF14Q92915 247 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 WRAP73Q9P2S5 460 aaPredicted RBP20.65■□□□□ 0.9
TPM1-226ENST00000560959 CACNA1IQ9P0X4 2223 aa20.65■□□□□ 0.9
TPM1-226ENST00000560959 TBX3O15119 743 aa20.64■□□□□ 0.89
TPM1-226ENST00000560959 POU2F2P09086 479 aa20.64■□□□□ 0.89
TPM1-226ENST00000560959 SSRP1Q08945 709 aaKnown RBP20.64■□□□□ 0.89
TPM1-226ENST00000560959 GRIK3Q13003 919 aa20.64■□□□□ 0.89
TPM1-226ENST00000560959 TFDP1Q14186 410 aa20.64■□□□□ 0.89
TPM1-226ENST00000560959 NPY5RQ15761 445 aa20.64■□□□□ 0.89
TPM1-226ENST00000560959 MLF2Q15773 248 aaPredicted RBP20.64■□□□□ 0.89
TPM1-226ENST00000560959 KRT25Q7Z3Z0 450 aa20.64■□□□□ 0.89
TPM1-226ENST00000560959 NELL2Q99435 816 aa20.64■□□□□ 0.89
TPM1-226ENST00000560959 MTRQ99707 1265 aa20.64■□□□□ 0.89
TPM1-226ENST00000560959 NFKBIZQ9BYH8 718 aa20.64■□□□□ 0.89
TPM1-226ENST00000560959 TRIM6Q9C030 488 aaPredicted RBP20.64■□□□□ 0.89
TPM1-226ENST00000560959 SLKQ9H2G2 1235 aaPredicted RBP20.64■□□□□ 0.89
TPM1-226ENST00000560959 FBXW11Q9UKB1 542 aa20.64■□□□□ 0.89
TPM1-226ENST00000560959 HES2Q9Y543 173 aa20.64■□□□□ 0.89
TPM1-226ENST00000560959 MTCL1Q9Y4B5 1905 aaKnown RBP20.64■□□□□ 0.89
TPM1-226ENST00000560959 PRR5-ARHGAP8B1AHC4 643 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 SLC37A4O43826 429 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 TADA2AO75478 443 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 DEXIO95424 95 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 GCFC2P16383 781 aaKnown RBP20.63■□□□□ 0.89
TPM1-226ENST00000560959 PSMA5P28066 241 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 HSPA4P34932 840 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 ARHGAP8P85298 464 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 SNW1Q13573 536 aaKnown RBP20.63■□□□□ 0.89
TPM1-226ENST00000560959 RTL10Q7L3V2 364 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 GRASPQ7Z6J2 395 aaPredicted RBP20.63■□□□□ 0.89
TPM1-226ENST00000560959 ZBTB44Q8NCP5 570 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 ATRIPQ8WXE1 791 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 NELL1Q92832 810 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 SECISBP2LQ93073 1101 aaKnown RBP20.63■□□□□ 0.89
TPM1-226ENST00000560959 B3GALT6Q96L58 329 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 LXNQ9BS40 222 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 ZSWIM4Q9H7M6 989 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 SPATA6Q9NWH7 488 aaPredicted RBP20.63■□□□□ 0.89
TPM1-226ENST00000560959 SNX14Q9Y5W7 946 aa20.63■□□□□ 0.89
TPM1-226ENST00000560959 SF3B1O75533 1304 aaKnown RBP eCLIP20.62■□□□□ 0.899e-6■■■■■ 68.9
TPM1-226ENST00000560959 INO80B-WBP1J3KQ70 363 aa20.62■□□□□ 0.89
TPM1-226ENST00000560959 LRRN2O75325 713 aa20.62■□□□□ 0.89
TPM1-226ENST00000560959 CCT2P78371 535 aaKnown RBP20.62■□□□□ 0.89
TPM1-226ENST00000560959 AMHR2Q16671 573 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms